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Aliases for LINC01402 Gene

Subcategory (RNA class) for LINC01402 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01402 Gene

  • Long Intergenic Non-Protein Coding RNA 1402 2 3 5
  • TCONS_00017087 3
  • GS1-421I3.4 3

External Ids for LINC01402 Gene

Summaries for LINC01402 Gene

GeneCards Summary for LINC01402 Gene

LINC01402 (Long Intergenic Non-Protein Coding RNA 1402) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01402 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01402 Gene

Genomics for LINC01402 Gene

GeneHancer (GH) Regulatory Elements for LINC01402 Gene

Promoters and enhancers for LINC01402 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ120309 Enhancer 1.2 Ensembl ENCODE 19.9 -190.5 -190500 2.4 PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 IRF4 YY1 ZNF213 ZNF416 TMEM255A NKAPP1 UPF3B EEF1A1P30 NKAP LINC01402 RHOXF2B CT47A6 CT47B1 CT47A1
GH0XJ120558 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 9.8 -441.4 -441356 6.1 CLOCK FOXA2 ARID4B DMAP1 YY1 POLR2B KLF13 SP3 SP5 SMARCB1 CUL4B MCTS1 C1GALT1C1 UPF3B LINC01402 GC0XM120506
GH0XJ119887 Enhancer 1 Ensembl ENCODE 13 +231.6 231615 1 ARID4B SIN3A KLF14 ZNF2 RAD21 ZNF335 ZNF121 GLIS2 ZNF143 KLF7 GC0XP119886 GC0XP119888 UPF3B NKAPP1 LINC01402 CXorf56 GC0XP119891
GH0XJ120144 Enhancer 0.8 Ensembl ENCODE 0.3 -24.7 -24701 0.4 MTA2 EBF1 MEF2B DPF2 RELA HDAC2 EGR1 SMARCA4 ZNF512 EED RHOXF2 LINC01402 NKAPP1 RHOXF1-AS1
GH0XJ120140 Enhancer 0.5 ENCODE 0.3 -20.7 -20729 0.2 USF1 MAX POU5F1 SIN3A USF2 RHOXF1 RHOXF2 LINC01402 RHOXF1-AS1 NKAPP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01402 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01402 Gene

Genomic Locations for LINC01402 Gene
chrX:120,117,642-120,119,700
(GRCh38/hg38)
Size:
2,059 bases
Orientation:
Minus strand
chrX:119,251,552-119,253,610
(GRCh37/hg19)
Size:
2,059 bases
Orientation:
Minus strand

Genomic View for LINC01402 Gene

Genes around LINC01402 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01402 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01402 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01402 Gene

Proteins for LINC01402 Gene

Post-translational modifications for LINC01402 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01402 Gene

Domains & Families for LINC01402 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01402 Gene

Function for LINC01402 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01402 Gene

Localization for LINC01402 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01402 Gene

Pathways & Interactions for LINC01402 Gene

SuperPathways for LINC01402 Gene

No Data Available

Interacting Proteins for LINC01402 Gene

Gene Ontology (GO) - Biological Process for LINC01402 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01402 Gene

Drugs & Compounds for LINC01402 Gene

No Compound Related Data Available

Transcripts for LINC01402 Gene

mRNA/cDNA for LINC01402 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01402 Gene

No ASD Table

Relevant External Links for LINC01402 Gene

GeneLoc Exon Structure for
LINC01402
ECgene alternative splicing isoforms for
LINC01402

Expression for LINC01402 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01402 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01402 Gene:

LINC01402
genes like me logo Genes that share expression patterns with LINC01402: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01402 Gene

Orthologs for LINC01402 Gene

Evolution for LINC01402 Gene

ENSEMBL:
Gene Tree for LINC01402 (if available)
TreeFam:
Gene Tree for LINC01402 (if available)

No data available for Orthologs for LINC01402 Gene

Paralogs for LINC01402 Gene

No data available for Paralogs for LINC01402 Gene

Variants for LINC01402 Gene

Sequence variations from dbSNP and Humsavar for LINC01402 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000927824 -- 120,120,963(-) G/A upstream_transcript_variant
rs1002051265 -- 120,119,349(-) A/G intron_variant
rs1002114263 -- 120,117,228(-) C/A downstream_transcript_variant
rs1002336556 -- 120,119,004(-) G/T intron_variant
rs1004397492 -- 120,119,576(-) C/G non_coding_transcript_variant

Additional Variant Information for LINC01402 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01402

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01402 Gene

Disorders for LINC01402 Gene

Additional Disease Information for LINC01402

No disorders were found for LINC01402 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01402 Gene

Publications for LINC01402 Gene

  1. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 58

Products for LINC01402 Gene

Sources for LINC01402 Gene

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