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Aliases for LINC01400 Gene

Subcategory (RNA class) for LINC01400 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01400 Gene

  • Long Intergenic Non-Protein Coding RNA 1400 2 3 5
  • TCONS_00015805 3

External Ids for LINC01400 Gene

Summaries for LINC01400 Gene

GeneCards Summary for LINC01400 Gene

LINC01400 (Long Intergenic Non-Protein Coding RNA 1400) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01400 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01400 Gene

Genomics for LINC01400 Gene

GeneHancer (GH) Regulatory Elements for LINC01400 Gene

Promoters and enhancers for LINC01400 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J037799 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 14.6 -725.3 -725337 2.9 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF416 EXOSC3 DCAF10 TRMT10B ZCCHC7 ZBTB5 POLR1E LINC01400 SLC25A51 TMX2P1 RPL21P83
GH09J037054 Enhancer 0.5 ENCODE 0.3 +21.7 21693 0.2 ZBTB21 GLIS1 CREB1 ATF7 ATF2 LOC105376032 PIR35365 GC09P037051 GC09P037050 GC09P037049 GC09P037048 LINC01400
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01400 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01400 Gene

Genomic Locations for LINC01400 Gene
chr9:37,073,531-37,075,792
(GRCh38/hg38)
Size:
2,262 bases
Orientation:
Minus strand
chr9:37,073,528-37,075,789
(GRCh37/hg19)
Size:
2,262 bases
Orientation:
Minus strand

Genomic View for LINC01400 Gene

Genes around LINC01400 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01400 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01400 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC01400 Gene

Proteins for LINC01400 Gene

Post-translational modifications for LINC01400 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01400 Gene

Domains & Families for LINC01400 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01400 Gene

Function for LINC01400 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01400 Gene

Localization for LINC01400 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01400 Gene

Pathways & Interactions for LINC01400 Gene

SuperPathways for LINC01400 Gene

No Data Available

Interacting Proteins for LINC01400 Gene

Gene Ontology (GO) - Biological Process for LINC01400 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01400 Gene

Drugs & Compounds for LINC01400 Gene

No Compound Related Data Available

Transcripts for LINC01400 Gene

mRNA/cDNA for LINC01400 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01400 Gene

No ASD Table

Relevant External Links for LINC01400 Gene

GeneLoc Exon Structure for
LINC01400
ECgene alternative splicing isoforms for
LINC01400

Expression for LINC01400 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01400 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01400 Gene:

LINC01400
genes like me logo Genes that share expression patterns with LINC01400: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01400 Gene

Orthologs for LINC01400 Gene

Evolution for LINC01400 Gene

ENSEMBL:
Gene Tree for LINC01400 (if available)
TreeFam:
Gene Tree for LINC01400 (if available)

No data available for Orthologs for LINC01400 Gene

Paralogs for LINC01400 Gene

No data available for Paralogs for LINC01400 Gene

Variants for LINC01400 Gene

Additional Variant Information for LINC01400 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01400

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01400 Gene

Disorders for LINC01400 Gene

No disorders were found for LINC01400 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01400 Gene

Publications for LINC01400 Gene

No publications were found for LINC01400 Gene.

Products for LINC01400 Gene

Sources for LINC01400 Gene

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