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Aliases for LINC01399 Gene

Subcategory (RNA class) for LINC01399 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01399 Gene

  • Long Intergenic Non-Protein Coding RNA 1399 2 3 5
  • CTA-714B7.5 3

External Ids for LINC01399 Gene

Summaries for LINC01399 Gene

GeneCards Summary for LINC01399 Gene

LINC01399 (Long Intergenic Non-Protein Coding RNA 1399) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01399 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01399 Gene

Genomics for LINC01399 Gene

GeneHancer (GH) Regulatory Elements for LINC01399 Gene

Promoters and enhancers for LINC01399 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH22J035231 Enhancer 0.8 ENCODE 650.7 0.0 -47 0.2 HDAC1 ELF3 PKNOX1 SMAD1 ATF1 TAF9B ARID4B POLR2B EGR1 ZSCAN5C LINC01399 MCM5 HMGXB4
GH22J035232 Enhancer 0.7 ENCODE 650.7 -0.6 -617 0.2 CTCF ZNF2 RAD21 RFX5 ZFHX2 ZNF614 BRD9 EGR1 SMC3 ZNF143 LINC01399 HMGXB4
GH22J035233 Enhancer 0.7 ENCODE 650.7 -0.3 -307 0.2 CTCF KLF1 PKNOX1 ATF1 FOXA2 CTBP1 ZNF614 MTA3 BRD9 VEZF1 LINC01399 HMGXB4
GH22J035133 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 4.4 +96.2 96158 2.2 ZSCAN4 EBF1 ZIC2 TCF12 NCOR1 CBFA2T2 ETV6 PRDM10 RUNX3 NRF1 LINC01399 ISX GC22P035126 ENSG00000238153
GH22J035130 Enhancer 1.2 FANTOM5 ENCODE dbSUPER 0.2 +99.4 99413 1.5 HDAC1 TEAD4 TAL1 TCF12 CTBP1 NCOR1 ADNP EED CBFA2T2 NFE2 ISX-AS1 GC22P035126 ENSG00000238153 LINC01399
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01399 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01399 Gene

Genomic Locations for LINC01399 Gene
chr22:35,119,824-35,231,056
(GRCh38/hg38)
Size:
111,233 bases
Orientation:
Minus strand
chr22:35,515,817-35,627,049
(GRCh37/hg19)
Size:
111,233 bases
Orientation:
Minus strand

Genomic View for LINC01399 Gene

Genes around LINC01399 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01399 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01399 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01399 Gene

Proteins for LINC01399 Gene

Post-translational modifications for LINC01399 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01399 Gene

Domains & Families for LINC01399 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01399 Gene

Function for LINC01399 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01399 Gene

Localization for LINC01399 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01399 Gene

Pathways & Interactions for LINC01399 Gene

SuperPathways for LINC01399 Gene

No Data Available

Interacting Proteins for LINC01399 Gene

Gene Ontology (GO) - Biological Process for LINC01399 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01399 Gene

Drugs & Compounds for LINC01399 Gene

No Compound Related Data Available

Transcripts for LINC01399 Gene

mRNA/cDNA for LINC01399 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01399 Gene

No ASD Table

Relevant External Links for LINC01399 Gene

GeneLoc Exon Structure for
LINC01399
ECgene alternative splicing isoforms for
LINC01399

Expression for LINC01399 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01399 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01399 Gene:

LINC01399
genes like me logo Genes that share expression patterns with LINC01399: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01399 Gene

Orthologs for LINC01399 Gene

Evolution for LINC01399 Gene

ENSEMBL:
Gene Tree for LINC01399 (if available)
TreeFam:
Gene Tree for LINC01399 (if available)

No data available for Orthologs for LINC01399 Gene

Paralogs for LINC01399 Gene

No data available for Paralogs for LINC01399 Gene

Variants for LINC01399 Gene

Sequence variations from dbSNP and Humsavar for LINC01399 Gene

SNP ID Clin Chr 22 pos Variation AA Info Type
rs1000068769 -- 35,200,543(-) A/G intron_variant
rs1000071265 -- 35,159,895(-) T/G intron_variant
rs1000088996 -- 35,159,644(-) C/T intron_variant
rs1000124750 -- 35,160,084(-) C/T intron_variant
rs1000135595 -- 35,202,065(-) T/C intron_variant

Additional Variant Information for LINC01399 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01399

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01399 Gene

Disorders for LINC01399 Gene

Additional Disease Information for LINC01399

No disorders were found for LINC01399 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01399 Gene

Publications for LINC01399 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3 58

Products for LINC01399 Gene

Sources for LINC01399 Gene

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