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Aliases for LINC01398 Gene

Subcategory (RNA class) for LINC01398 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01398 Gene

  • Long Intergenic Non-Protein Coding RNA 1398 2 3 5

External Ids for LINC01398 Gene

Summaries for LINC01398 Gene

GeneCards Summary for LINC01398 Gene

LINC01398 (Long Intergenic Non-Protein Coding RNA 1398) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01398 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01398 Gene

Genomics for LINC01398 Gene

GeneHancer (GH) Regulatory Elements for LINC01398 Gene

Promoters and enhancers for LINC01398 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J046441 Promoter/Enhancer 1.5 Ensembl ENCODE 0.4 +8.6 8623 1.5 HDGF PKNOX1 SMAD1 ARNT ZFP64 SIN3A FEZF1 ZNF2 E2F8 ZNF143 LRRC41 GPBP1L1 RPL7AP16 NSUN4 FAAHP1 RPS15AP10 TEX38 MOB3C EFCAB14-AS1 PRDX1
GH01J046446 Enhancer 0.8 ENCODE 0.7 +4.2 4237 0.2 ATF1 RB1 SIN3A ZNF2 RAD21 ARID2 ZNF143 ATF7 CREM ZNF654 LRRC41 GPBP1L1 RPL7AP16 RPS15AP10 MOB3C EFCAB14-AS1 LINC01398 FAAHP1
GH01J046489 Promoter/Enhancer 1.3 EPDnew ENCODE 0.3 -38.5 -38513 0.1 HDAC1 PKNOX1 ATF1 RB1 SIN3A ZNF335 FOS ATF7 CREM SP3 DMBX1 GPBP1L1 EFCAB14-AS1 LRRC41 NSUN4 RPL7AP16 MOB3C LINC01389 LINC01398
GH01J046466 Enhancer 0.9 Ensembl ENCODE 0.4 -15.6 -15614 1.7 KLF1 ZIC2 ZNF335 ZNF121 ZFHX2 GLIS2 PATZ1 VEZF1 ZNF600 EZH2 LINC01398 DMBX1 FAAHP1
GH01J046448 Enhancer 0.5 ENCODE 0.7 +2.8 2817 0.2 NANOG SUZ12 POU5F1 SIN3A CTBP2 EZH2 LINC01398 FAAHP1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01398 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01398 Gene

Genomic Locations for LINC01398 Gene
chr1:46,446,673-46,451,281
(GRCh38/hg38)
Size:
4,609 bases
Orientation:
Minus strand
chr1:46,912,345-46,915,376
(GRCh37/hg19)
Size:
3,032 bases
Orientation:
Minus strand

Genomic View for LINC01398 Gene

Genes around LINC01398 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01398 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01398 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01398 Gene

Proteins for LINC01398 Gene

Post-translational modifications for LINC01398 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01398 Gene

Domains & Families for LINC01398 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01398 Gene

Function for LINC01398 Gene

Phenotypes From GWAS Catalog for LINC01398 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01398 Gene

Localization for LINC01398 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01398 Gene

Pathways & Interactions for LINC01398 Gene

SuperPathways for LINC01398 Gene

No Data Available

Interacting Proteins for LINC01398 Gene

Gene Ontology (GO) - Biological Process for LINC01398 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01398 Gene

Drugs & Compounds for LINC01398 Gene

No Compound Related Data Available

Transcripts for LINC01398 Gene

mRNA/cDNA for LINC01398 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01398 Gene

No ASD Table

Relevant External Links for LINC01398 Gene

GeneLoc Exon Structure for
LINC01398
ECgene alternative splicing isoforms for
LINC01398

Expression for LINC01398 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01398 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01398 Gene:

LINC01398
genes like me logo Genes that share expression patterns with LINC01398: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01398 Gene

Orthologs for LINC01398 Gene

Evolution for LINC01398 Gene

ENSEMBL:
Gene Tree for LINC01398 (if available)
TreeFam:
Gene Tree for LINC01398 (if available)

No data available for Orthologs for LINC01398 Gene

Paralogs for LINC01398 Gene

No data available for Paralogs for LINC01398 Gene

Variants for LINC01398 Gene

Sequence variations from dbSNP and Humsavar for LINC01398 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000207176 -- 46,446,956(-) G/T non_coding_transcript_variant
rs1000658498 -- 46,451,563(-) G/T upstream_transcript_variant
rs1001572196 -- 46,447,587(-) C/T non_coding_transcript_variant
rs1001667194 -- 46,447,329(-) C/T intron_variant
rs1001735723 -- 46,446,958(-) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01398 Gene

Variant ID Type Subtype PubMed ID
esv2761743 CNV gain 21179565

Additional Variant Information for LINC01398 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01398

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01398 Gene

Disorders for LINC01398 Gene

Additional Disease Information for LINC01398

No disorders were found for LINC01398 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01398 Gene

Publications for LINC01398 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01398 Gene

Sources for LINC01398 Gene

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