Aliases for LINC01397 Gene

Subcategory (RNA class) for LINC01397 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01397 Gene

  • Long Intergenic Non-Protein Coding RNA 1397 2 3 5
  • LINC01397 2 170
  • HSALNG0005949 169
  • NONHSAG002368 94

External Ids for LINC01397 Gene

Previous GeneCards Identifiers for LINC01397 Gene

  • GC01P110083
  • GC01P110102
  • GC01P110108
  • GC01P110085
  • GC01P110089
  • GC01P110094
  • GC01P110099

Summaries for LINC01397 Gene

GeneCards Summary for LINC01397 Gene

LINC01397 (Long Intergenic Non-Protein Coding RNA 1397) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01397 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01397 Gene

Genomics for LINC01397 Gene

GeneHancer (GH) Regulatory Elements for LINC01397 Gene

Promoters and enhancers for LINC01397 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110083 Enhancer 0.8 FANTOM5 ENCODE 0.6 +2.3 2278 1.8 L3MBTL2 ELF3 PRDM1 RNF2 BACH1 ZNF512 POLR2A IRF2 EZH2 MBD1 lnc-STRIP1-2 STRIP1 LINC01397 UBL4B
GH01J110097 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 +16.2 16158 2.3 NR2F6 ZIC2 ZNF512 CTBP1 CEBPB ATF7 MAZ ESRRA STAT1 NR2C2 STRIP1 UBL4B lnc-STRIP1-2 LINC01397 lnc-ALX3-5
GH01J110087 Enhancer 0.8 Ensembl CraniofacialAtlas 0.4 +6.9 6892 2.6 CTCF RAD21 TEAD4 CBFA2T2 REST PKNOX1 PATZ1 MNT NR2C1 DEK UBL4B STRIP1 LINC01397 lnc-STRIP1-2 lnc-ALX3-5
GH01J110070 Promoter 0.8 EPDnew Ensembl 0.4 -11.5 -11529 0.2 EZH2 USF1 ALX3 LINC01397 STRIP1
GH01J110106 Enhancer 0.9 Ensembl ENCODE 0.3 +24.2 24153 0.8 CTCF MYC CC2D1A MAX DACH1 RAD21 CREB1 ARID2 REST TRIM22 UBL4B LINC01397 lnc-STRIP1-2 lnc-ALX3-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01397 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01397 Gene

Genomic Locations for LINC01397 Gene
chr1:110,082,230-110,110,239
(GRCh38/hg38)
Size:
28,010 bases
Orientation:
Plus strand
chr1:110,625,310-110,652,341
(GRCh37/hg19)
Size:
27,032 bases
Orientation:
Plus strand

Genomic View for LINC01397 Gene

Genes around LINC01397 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01397 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01397 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01397 Gene

Proteins for LINC01397 Gene

Post-translational modifications for LINC01397 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01397 Gene

Domains & Families for LINC01397 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01397 Gene

Function for LINC01397 Gene

Phenotypes From GWAS Catalog for LINC01397 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01397 Gene

Localization for LINC01397 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01397 Gene

Pathways & Interactions for LINC01397 Gene

PathCards logo

SuperPathways for LINC01397 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01397 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01397 Gene

Drugs & Compounds for LINC01397 Gene

No Compound Related Data Available

Transcripts for LINC01397 Gene

mRNA/cDNA for LINC01397 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(5) LNCipedia transcripts :
(5) NONCODE transcripts :
(4) LncBook transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01397 Gene

No ASD Table

Relevant External Links for LINC01397 Gene

GeneLoc Exon Structure for
LINC01397
ECgene alternative splicing isoforms for
LINC01397

Expression for LINC01397 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01397 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01397 Gene:

LINC01397
genes like me logo Genes that share expression patterns with LINC01397: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01397 Gene

Orthologs for LINC01397 Gene

Evolution for LINC01397 Gene

ENSEMBL:
Gene Tree for LINC01397 (if available)
TreeFam:
Gene Tree for LINC01397 (if available)

No data available for Orthologs for LINC01397 Gene

Paralogs for LINC01397 Gene

No data available for Paralogs for LINC01397 Gene

Variants for LINC01397 Gene

Sequence variations from dbSNP and Humsavar for LINC01397 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000050544 -- 110,107,985(+) G/A intron_variant
rs1000101299 -- 110,101,911(+) T/C intron_variant
rs1000145542 -- 110,097,689(+) C/T intron_variant
rs1000202015 -- 110,109,304(+) T/A/G non_coding_transcript_variant
rs1000262168 -- 110,097,412(+) T/C intron_variant

Additional Variant Information for LINC01397 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01397

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01397 Gene

Disorders for LINC01397 Gene

Additional Disease Information for LINC01397

No disorders were found for LINC01397 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01397 Gene

Publications for LINC01397 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56

Products for LINC01397 Gene

Sources for LINC01397 Gene