Free for academic non-profit institutions. Other users need a Commercial license
Aliases for LINC01397 Gene
Subcategory (RNA class) for LINC01397 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01397 Gene
External Ids for LINC01397 Gene
- HGNC: 50677
- Entrez Gene: 104355139
- Ensembl: ENSG00000258673
Previous GeneCards Identifiers for LINC01397 Gene
- GC01P110083
- GC01P110102
- GC01P110108
- GC01P110109
- GC01P110120
- GC01P110085
- GC01P110089
- GC01P110094
- GC01P110099
Summaries for LINC01397 Gene
GeneCards Summary for LINC01397 Gene
LINC01397 (Long Intergenic Non-Protein Coding RNA 1397) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01397 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01397 Gene
Genomics for LINC01397 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01397 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J110082 | Promoter | 0.6 | EPDnew | 600.7 | +0.4 | 445 | 0.1 | ZIC2 EZH2 CEBPG ZFP69B ATF4 PTTG1 | LINC01397 lnc-STRIP1-2 ALX3 UBL4B | |
| GH01J110083 | Enhancer | 0.8 | FANTOM5 ENCODE | 0.7 | +2.3 | 2278 | 1.8 | RNF2 ZNF512 BACH1 PRDM1 POLR2A IRF2 EZH2 EED BCLAF1 MBD1 | lnc-STRIP1-2 STRIP1 LINC01397 ALX3 UBL4B | |
| GH01J110087 | Enhancer | 0.9 | Ensembl CraniofacialAtlas | 0.4 | +6.9 | 6892 | 2.6 | CTCF PKNOX1 PATZ1 REST NR2C1 RAD21 MNT NR2C2 SMC3 ZKSCAN1 | UBL4B STRIP1 LINC01397 lnc-STRIP1-2 ALX3 lnc-ALX3-5 | |
| GH01J110097 | Enhancer | 1 | Ensembl ENCODE CraniofacialAtlas | 0.4 | +16.2 | 16158 | 2.3 | ATF7 ZNF512 ZIC2 ZNF341 CTBP1 CEBPB NR2C2 ESRRA MAZ WT1 | STRIP1 UBL4B lnc-STRIP1-2 LINC01397 ALX3 lnc-ALX3-5 | |
| GH01J110070 | Promoter | 0.8 | EPDnew Ensembl | 0.4 | -11.5 | -11529 | 0.2 | EZH2 USF1 | ALX3 LINC01397 STRIP1 UBL4B |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01397 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01397 Gene
Genomic Locations for LINC01397 Gene
- chr1:110,082,230-110,110,239
- (GRCh38/hg38)
- Size:
- 28,010 bases
- Orientation:
- Plus strand
- chr1:110,625,310-110,652,341
- (GRCh37/hg19)
- Size:
- 27,032 bases
- Orientation:
- Plus strand
Genomic View for LINC01397 Gene
Genes around LINC01397 on UCSC Golden Path with GeneCards custom track
LINC01397 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p13.3 by HGNC
- 1p13.3 by Entrez Gene
- 1p13.3 by Ensembl
LINC01397 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01397 Gene
Proteins for LINC01397 Gene
Post-translational modifications for LINC01397 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01397
- Origene Custom Protein Services for LINC01397
No data available for DME Specific Peptides for LINC01397 Gene
Domains & Families for LINC01397 Gene
Gene Families for LINC01397 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01397 Gene
Function for LINC01397 Gene
Phenotypes From GWAS Catalog for LINC01397 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01397
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01397 Gene
Localization for LINC01397 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01397 Gene
Transcripts for LINC01397 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01397 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS00000ED31F_9606 | lncRNA | 579 | 6 |
HGNC: 50677, RefSeq: NR_126382, Ensembl: ENST00000554808 (view in UCSC) , LncBook: HSALNT0012327, LNCipedia: LINC01397:3, NONCODE: NONHSAT005095.2, |
| URS00008C2D89_9606 | lncRNA | 1561 | 3 |
LncBook: HSALNT0012324, LNCipedia: LINC01397:1, NONCODE: NONHSAT005093.2, |
| URS00008BF9A2_9606 | lncRNA | 377 | 3 |
LncBook: HSALNT0012330, LNCipedia: LINC01397:5, NONCODE: NONHSAT005096.2, |
| URS00008BD1BD_9606 | lncRNA | 604 | 2 |
LNCipedia: LINC01397:2, NONCODE: NONHSAT005094.2, |
| URS00009BCAAC_9606 | lncRNA | 258 | 2 |
LncBook: HSALNT0012328, NONCODE: NONHSAT149531.1, |
LINC01397 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01397 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01397
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01397 Gene
- GeneLoc Exon Structure for
- LINC01397
Expression for LINC01397 Gene
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01397 Gene
Orthologs for LINC01397 Gene
No data available for Orthologs for LINC01397 Gene
Paralogs for LINC01397 Gene
No data available for Paralogs for LINC01397 Gene
Variants for LINC01397 Gene
Additional Variant Information for LINC01397 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01397
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01397 Gene
Disorders for LINC01397 Gene
Additional Disease Information for LINC01397
No disorders were found for LINC01397 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01397 Gene
Publications for LINC01397 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
Products for LINC01397 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01397
- Origene Custom Protein Services for LINC01397
- Browse OriGene Inhibitory RNA Products For LINC01397
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01397
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01397
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01397
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01397
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01397
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01397
Sources for LINC01397 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB