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LINC01397 (Long Intergenic Non-Protein Coding RNA 1397) is an RNA Gene, and is affiliated with the lncRNA class.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J110082 | Promoter | 0.6 | EPDnew | 600.7 | +0.4 | 445 | 0.1 | ZIC2 EZH2 CEBPG ZFP69B ATF4 PTTG1 | LINC01397 lnc-STRIP1-2 ALX3 UBL4B | |
GH01J110083 | Enhancer | 0.8 | FANTOM5 ENCODE | 0.7 | +2.3 | 2278 | 1.8 | RNF2 ZNF512 BACH1 PRDM1 POLR2A IRF2 EZH2 EED BCLAF1 MBD1 | lnc-STRIP1-2 STRIP1 LINC01397 ALX3 UBL4B | |
GH01J110087 | Enhancer | 0.9 | Ensembl CraniofacialAtlas | 0.4 | +6.9 | 6892 | 2.6 | CTCF PKNOX1 PATZ1 REST NR2C1 RAD21 MNT NR2C2 SMC3 ZKSCAN1 | UBL4B STRIP1 LINC01397 lnc-STRIP1-2 ALX3 lnc-ALX3-5 | |
GH01J110097 | Enhancer | 1 | Ensembl ENCODE CraniofacialAtlas | 0.4 | +16.2 | 16158 | 2.3 | ATF7 ZNF512 ZIC2 ZNF341 CTBP1 CEBPB NR2C2 ESRRA MAZ WT1 | STRIP1 UBL4B lnc-STRIP1-2 LINC01397 ALX3 lnc-ALX3-5 | |
GH01J110070 | Promoter | 0.8 | EPDnew Ensembl | 0.4 | -11.5 | -11529 | 0.2 | EZH2 USF1 | ALX3 LINC01397 STRIP1 UBL4B |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS00000ED31F_9606 | lncRNA | 579 | 6 |
HGNC: 50677, RefSeq: NR_126382, Ensembl: ENST00000554808 (view in UCSC) , LncBook: HSALNT0012327, LNCipedia: LINC01397:3, NONCODE: NONHSAT005095.2, |
URS00008C2D89_9606 | lncRNA | 1561 | 3 |
LncBook: HSALNT0012324, LNCipedia: LINC01397:1, NONCODE: NONHSAT005093.2, |
URS00008BF9A2_9606 | lncRNA | 377 | 3 |
LncBook: HSALNT0012330, LNCipedia: LINC01397:5, NONCODE: NONHSAT005096.2, |
URS00008BD1BD_9606 | lncRNA | 604 | 2 |
LNCipedia: LINC01397:2, NONCODE: NONHSAT005094.2, |
URS00009BCAAC_9606 | lncRNA | 258 | 2 |
LncBook: HSALNT0012328, NONCODE: NONHSAT149531.1, |
No disorders were found for LINC01397 Gene.