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Aliases for LINC01397 Gene

Subcategory (RNA class) for LINC01397 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01397 Gene

  • Long Intergenic Non-Protein Coding RNA 1397 2 3 5

External Ids for LINC01397 Gene

Previous GeneCards Identifiers for LINC01397 Gene

  • GC01P110083
  • GC01P110085
  • GC01P110089

Summaries for LINC01397 Gene

GeneCards Summary for LINC01397 Gene

LINC01397 (Long Intergenic Non-Protein Coding RNA 1397) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01397 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01397 Gene

Genomics for LINC01397 Gene

GeneHancer (GH) Regulatory Elements for LINC01397 Gene

Promoters and enhancers for LINC01397 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J110083 Enhancer 1.1 FANTOM5 Ensembl ENCODE 650.7 +1.8 1820 1.8 ELF3 IRF2 L3MBTL2 SUZ12 RNF2 NRF1 BACH1 ELF1 TEAD3 ZGPAT LINC01397 STRIP1 GC01M110085
GH01J110097 Enhancer 0.7 ENCODE 0.4 +15.7 15653 2.2 BCOR TFAP4 ESRRA KLF17 ZMYM3 ZIC2 RARA TEAD3 CTBP1 GATA3 STRIP1 UBL4B GC01M110085 LINC01397
GH01J110106 Enhancer 0.8 ENCODE 0.3 +23.6 23616 0.2 RB1 SREBF2 SIN3A RAD21 RFX5 ARID2 ZNF143 RCOR1 ATF7 RUNX3 UBL4B GC01M110085 LINC01397
GH01J110102 Enhancer 0.3 Ensembl 0.4 +19.8 19813 0.2 EED UBL4B GC01M110085 LINC01397
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01397 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01397 Gene

Genomic Locations for LINC01397 Gene
chr1:110,082,688-110,109,719
(GRCh38/hg38)
Size:
27,032 bases
Orientation:
Plus strand
chr1:110,625,310-110,652,341
(GRCh37/hg19)
Size:
27,032 bases
Orientation:
Plus strand

Genomic View for LINC01397 Gene

Genes around LINC01397 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01397 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01397 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01397 Gene

Proteins for LINC01397 Gene

Post-translational modifications for LINC01397 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01397 Gene

Domains & Families for LINC01397 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01397 Gene

Function for LINC01397 Gene

Phenotypes From GWAS Catalog for LINC01397 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01397 Gene

Localization for LINC01397 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01397 Gene

Pathways & Interactions for LINC01397 Gene

SuperPathways for LINC01397 Gene

No Data Available

Interacting Proteins for LINC01397 Gene

Gene Ontology (GO) - Biological Process for LINC01397 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01397 Gene

Drugs & Compounds for LINC01397 Gene

No Compound Related Data Available

Transcripts for LINC01397 Gene

mRNA/cDNA for LINC01397 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01397 Gene

No ASD Table

Relevant External Links for LINC01397 Gene

GeneLoc Exon Structure for
LINC01397
ECgene alternative splicing isoforms for
LINC01397

Expression for LINC01397 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01397 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01397 Gene:

LINC01397
genes like me logo Genes that share expression patterns with LINC01397: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01397 Gene

Orthologs for LINC01397 Gene

Evolution for LINC01397 Gene

ENSEMBL:
Gene Tree for LINC01397 (if available)
TreeFam:
Gene Tree for LINC01397 (if available)

No data available for Orthologs for LINC01397 Gene

Paralogs for LINC01397 Gene

No data available for Paralogs for LINC01397 Gene

Variants for LINC01397 Gene

Sequence variations from dbSNP and Humsavar for LINC01397 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000050544 -- 110,107,985(+) G/A intron_variant
rs1000101299 -- 110,101,911(+) T/C intron_variant
rs1000145542 -- 110,097,689(+) C/T intron_variant
rs1000202015 -- 110,109,304(+) T/A/G non_coding_transcript_variant
rs1000262168 -- 110,097,412(+) T/C intron_variant

Additional Variant Information for LINC01397 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01397

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01397 Gene

Disorders for LINC01397 Gene

Additional Disease Information for LINC01397

No disorders were found for LINC01397 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01397 Gene

Publications for LINC01397 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01397 Gene

Sources for LINC01397 Gene

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