Aliases for LINC01397 Gene
Subcategory (RNA class) for LINC01397 Gene
non-coding RNA
Quality Score for this RNA gene is
13
External Ids for LINC01397 Gene
- HGNC: 50677
- Entrez Gene: 104355139
- Ensembl: ENSG00000258673
Previous GeneCards Identifiers for LINC01397 Gene
- GC01P110083
- GC01P110085
- GC01P110089
Summaries for LINC01397 Gene
GeneCards Summary for LINC01397 Gene
LINC01397 (Long Intergenic Non-Protein Coding RNA 1397) is an RNA Gene, and is affiliated with the non-coding RNA class.
Additional gene information for LINC01397 Gene
No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01397 Gene
Genomics for LINC01397 Gene
GeneHancer (GH) Regulatory Elements for LINC01397 Gene
Promoters and enhancers for LINC01397 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J110083 | Enhancer | 1.1 | FANTOM5 Ensembl ENCODE | 650.7 | +1.8 | 1820 | 1.8 | ELF3 IRF2 L3MBTL2 SUZ12 RNF2 NRF1 BACH1 ELF1 TEAD3 ZGPAT | LINC01397 STRIP1 GC01M110085 | |
| GH01J110097 | Enhancer | 0.7 | ENCODE | 0.4 | +15.7 | 15653 | 2.2 | BCOR TFAP4 ESRRA KLF17 ZMYM3 ZIC2 RARA TEAD3 CTBP1 GATA3 | STRIP1 UBL4B GC01M110085 LINC01397 | |
| GH01J110106 | Enhancer | 0.8 | ENCODE | 0.3 | +23.6 | 23616 | 0.2 | RB1 SREBF2 SIN3A RAD21 RFX5 ARID2 ZNF143 RCOR1 ATF7 RUNX3 | UBL4B GC01M110085 LINC01397 | |
| GH01J110102 | Enhancer | 0.3 | Ensembl | 0.4 | +19.8 | 19813 | 0.2 | EED | UBL4B GC01M110085 LINC01397 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01397 on UCSC Golden Path with GeneCards custom track
Regulatory Element Products
Genomic Locations for LINC01397 Gene
Genomic Locations for LINC01397 Gene
- chr1:110,082,688-110,109,719
- (GRCh38/hg38)
- Size:
- 27,032 bases
- Orientation:
- Plus strand
- chr1:110,625,310-110,652,341
- (GRCh37/hg19)
- Size:
- 27,032 bases
- Orientation:
- Plus strand
Genomic View for LINC01397 Gene
Genes around LINC01397 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 1p13.3 by Entrez Gene
- 1p13.3 by HGNC
- 1p13.3 by Ensembl
LINC01397 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01397 Gene
Proteins for LINC01397 Gene
Post-translational modifications for LINC01397 Gene
No Post-translational modifications
Antibody Products
- Search GeneTex for Antibodies for LINC01397
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01397
- Origene Custom Protein Services for LINC01397
- Search GeneTex for Proteins for LINC01397
No data available for DME Specific Peptides for LINC01397 Gene
Domains & Families for LINC01397 Gene
Graphical View of Domain Structure for InterPro Entry
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01397 Gene
Function for LINC01397 Gene
Phenotypes From GWAS Catalog for LINC01397 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
- Cyagen custom Knockout/knockin (KOKI) mouse models for LINC01397
-
miRNA Products
Inhibitory RNA Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01397 Gene
Localization for LINC01397 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01397 Gene
Transcripts for LINC01397 Gene
mRNA/cDNA for LINC01397 Gene
- (1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
-
- ENST00000554808 579 bps (uc057jdb.1)
- (1) RNA Central transcripts :
CRISPR Products
- Browse CRISPR knockouts for LINC01397
miRNA Products
Inhibitory RNA Products
Expression for LINC01397 Gene
NURSA nuclear receptor signaling pathways regulating expression of LINC01397 Gene:
LINC01397
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01397 Gene
Orthologs for LINC01397 Gene
No data available for Orthologs for LINC01397 Gene
Paralogs for LINC01397 Gene
No data available for Paralogs for LINC01397 Gene
Variants for LINC01397 Gene
| SNP ID | Clin | Chr 01 pos | Variation | AA Info | Type |
|---|---|---|---|---|---|
| rs1000050544 | -- | 110,107,985(+) | G/A | intron_variant | |
| rs1000101299 | -- | 110,101,911(+) | T/C | intron_variant | |
| rs1000145542 | -- | 110,097,689(+) | C/T | intron_variant | |
| rs1000202015 | -- | 110,109,304(+) | T/A/G | non_coding_transcript_variant | |
| rs1000262168 | -- | 110,097,412(+) | T/C | intron_variant |
Additional Variant Information for LINC01397 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01397
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01397 Gene
Disorders for LINC01397 Gene
Additional Disease Information for LINC01397
No disorders were found for LINC01397 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01397 Gene
Publications for LINC01397 Gene
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
Products for LINC01397 Gene
- Browse R&D Systems for Antibodies
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- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Search GeneTex for Antibodies for LINC01397
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- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01397
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Sources for LINC01397 Gene
- (1) GeneCards
- (2) HGNC
- (3) EntrezGene
- (4) Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) GO
- (12) TrEMBL
- (13) InterPro
- (14) ProtoNet
- (15) Blocks
- (16) MGI
- (17) IUBMB
- (18) KEGG
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- (20) STRING
- (21) IntAct
- (22) Novoseek
- (23) PharmGKB
- (24) DrugBank
- (25) HMDB
- (26) UniGene
- (27) AceView
- (28) ASD
- (29) ECgene
- (30) GeneAnnot
- (31) CGAP SAGE
- (32) SOURCE
- (33) HomoloGene
- (34) PanEnsembl
- (35) euGenes
- (36) SGD
- (37) FlyBase
- (38) WormBase
- (39) Pseudogene
- (40) DGV
- (41) dbSNP
- (42) GenAtlas
- (43) HGMD
- (44) GAD
- (45) BGMUT
- (46) HuGE
- (47) Atlas
- (48) Cell Signaling Technology
- (49) GenBank
- (50) H-invDB
- (51) HORDE
- (52) HUGE
- (53) IMGT
- (54) Leiden
- (55) miRBase
- (56) DME
- (57) OriGene
- (58) PubMed
- (59) R&D Systems
- (60) TGDB
- (61) Tocris
- (62) Abcam
- (63) Novus Biologicals
- (64) ProSpec
- (65) Sino Biological
- (66) GenScript
- (67) Qiagen
- (68) Cloud-Clone Corp.
- (69) OCA
- (70) Proteopedia
- (71) MOPED
- (72) neXtProt
- (73) Reactome
- (74) GeneGo (Thomson Reuters)
- (75) fRNAdb
- (76) DISEASES
- (77) SIMAP
- (78) GenomeRNAi
- (79) LifeMap
- (80) miRTarBase
- (81) MalaCards
- (82) Invitrogen
- (83) BitterDB
- (84) Vector BioLabs
- (85) ESI-BIO
- (86) RefSeq
- (87) BioSystems
- (88) MaxQB
- (89) IUPHAR
- (90) BioGPS
- (91) Illumina
- (92) COMPARTMENTS
- (93) HOMER
- (94) PaxDb
- (95) ApexBio
- (96) Addgene
- (97) antibodies-online
- (98) CYP
- (99) NONCODE
- (100) SwitchGear Genomics
- (101) TreeFam
- (102) PathCards
- (103) GeneReviews
- (104) GeneTex
- (105) Taconic Biosciences
- (106) GTEx
- (107) ProteomicsDB
- (108) SCBT
- (109) DGIdb
- (110) ClinicalTrials
- (111) FDA Approved Drugs
- (112) RVIS
- (113) SIGNOR
- (114) diseasecard
- (115) NIH Rare Diseases
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- (117) UMLS
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- (119) Disease Ontology
- (120) Genetics Home Reference
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- (128) ViGene Biosciences
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- (133) ENCODE
- (134) ProSci
- (135) Horizon
- (136) NURSA
- (137) IID
- (138) Cyagen
- (139) VectorBuilder
- (140) SNPedia
- (141) BRCA Exchange
- (142) St John's Lab
- (143) CIViC
- (144) ProteoGenix
- (145) dbSUPER
- (146) TISSUES
- (147) Gene ORGANizer
- (148) abm
- (149) CrownBio
- (150) Human Protein Atlas
- (151) GWAS Catalog
- (152) Monarch Initiative
- (153) DataMed
- (154) HumanCyc
- (155) genomics-online
- (156) UCNEbase
- (157) EPDnew
- (158) Applied Biosystems
- (159) GlyConnect
- (160) Aminode
- (161) GeneCopoeia
- (162) GPS-Prot
- (163) RNACentral
- (164) LncRNADisease
- (165) LOVD
- (166) miR2Disease
- (167) DiseaseEnhancer
- (168) Boster Bio
- (169) Biorbyt