Aliases for LINC01396 Gene

Subcategory (RNA class) for LINC01396 Gene

lncRNA

Number of RNA Genes sources:

2 / 14

Aliases for LINC01396 Gene

  • Long Intergenic Non-Protein Coding RNA 1396 2 3 5
  • LINC01396 2 168
  • HSALNG0032560 167

External Ids for LINC01396 Gene

Summaries for LINC01396 Gene

GeneCards Summary for LINC01396 Gene

LINC01396 (Long Intergenic Non-Protein Coding RNA 1396) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01396 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01396 Gene

Genomics for LINC01396 Gene

GeneHancer (GH) Regulatory Elements for LINC01396 Gene

Promoters and enhancers for LINC01396 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J004838 Enhancer 0.8 Ensembl CraniofacialAtlas 0.4 -5.9 -5903 1.8 CLOCK RFX1 RBM25 ZNF282 USF1 MYC SUZ12 ZNF18 TFAP4 NBN LINC01396 ENSG00000280310 lnc-MSX1-4
GH04J004852 Enhancer 0.7 ENCODE 0.4 +9.0 8987 1.1 NRF1 ZBTB11 CTCF GABPA SUZ12 FOXP2 EGR1 TAF1 ETV1 RAD21 HSALNG0032565 LINC01396
GH04J004840 Enhancer 0.3 CraniofacialAtlas 0.7 -3.6 -3614 0.2 USF1 PRDM4 LINC01396 ENSG00000280310 lnc-MSX1-4
GH04J004856 Enhancer 0.5 ENCODE 0.4 +12.4 12361 0.2 EZH2 E2F6 SUZ12 TCF7L2 MEIS2 RNF2 GATA2 ZFX HSALNG0032565 LINC01396
GH04J004853 Enhancer 0.5 FANTOM5 0.4 +9.8 9764 0.2 RNF2 SUZ12 EZH2 HSALNG0032565 LINC01396
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01396 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01396 Gene

Genomic Locations for LINC01396 Gene
chr4:4,844,188-4,850,827
(GRCh38/hg38)
Size:
6,640 bases
Orientation:
Plus strand
chr4:4,846,164-4,852,554
(GRCh37/hg19)
Size:
6,391 bases
Orientation:
Plus strand

Genomic View for LINC01396 Gene

Genes around LINC01396 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01396 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01396 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01396 Gene

Proteins for LINC01396 Gene

Post-translational modifications for LINC01396 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01396 Gene

Domains & Families for LINC01396 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01396 Gene

Function for LINC01396 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01396 Gene

Localization for LINC01396 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01396 Gene

Pathways & Interactions for LINC01396 Gene

PathCards logo

SuperPathways for LINC01396 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01396 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01396 Gene

Drugs & Compounds for LINC01396 Gene

No Compound Related Data Available

Transcripts for LINC01396 Gene

mRNA/cDNA for LINC01396 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
1 LncBook transcripts :
1 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01396 Gene

No ASD Table

Relevant External Links for LINC01396 Gene

GeneLoc Exon Structure for
LINC01396

Expression for LINC01396 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01396 Gene

Orthologs for LINC01396 Gene

Evolution for LINC01396 Gene

ENSEMBL:
Gene Tree for LINC01396 (if available)
TreeFam:
Gene Tree for LINC01396 (if available)

No data available for Orthologs for LINC01396 Gene

Paralogs for LINC01396 Gene

No data available for Paralogs for LINC01396 Gene

Variants for LINC01396 Gene

Additional dbSNP identifiers (rs#s) for LINC01396 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01396 Gene

Variant ID Type Subtype PubMed ID
dgv1451e212 CNV loss 25503493
esv34196 OTHER inversion 12058347
esv3569249 CNV loss 25503493
nsv1109576 CNV deletion 24896259
nsv997889 CNV gain 25217958

Additional Variant Information for LINC01396 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01396

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01396 Gene

Disorders for LINC01396 Gene

Additional Disease Information for LINC01396

No disorders were found for LINC01396 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01396 Gene

Publications for LINC01396 Gene

No publications were found for LINC01396 Gene.

Products for LINC01396 Gene

Sources for LINC01396 Gene