Aliases for LINC01395 Gene

Data sources for LINC01395 Gene:

Subcategory (RNA class) for LINC01395 Gene

lncRNA

Aliases for LINC01395 Gene

External Ids for LINC01395 Gene

Previous GeneCards Identifiers for LINC01395 Gene

  • GC11M129612

Summaries for LINC01395 Gene

GeneCards Summary for LINC01395 Gene

LINC01395 (Long Intergenic Non-Protein Coding RNA 1395) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01395 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01395 Gene

Genomics for LINC01395 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01395 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J129621 Enhancer 0.7 Ensembl dbSUPER 0.4 +13.3 13288 0.2 FEZF1 EP300 ZNF629 OSR2 CEBPB ZBTB20 ZBTB44 HSALNG0088167-002 HSALNG0088167-003 RF00994-210 LINC01395 TMEM45B BARX2
GH11J129612 Enhancer 0.8 Ensembl dbSUPER 0.3 +22.0 21987 1.2 FEZF1 ZNF316 NFE2 MAFG ZNF384 MAFF NR2F6 ESRRA KLF1 EGR2 HSALNG0088166 HSALNG0088167-001 LINC01395 ENSG00000281386 TMEM45B BARX2
GH11J129593 Enhancer 0.7 Ensembl ENCODE dbSUPER 0.3 +41.0 40987 0.4 NFIB MNT RFX1 ENSG00000281386 HSALNG0088162 LINC01395 BARX2 TMEM45B
GH11J129626 Enhancer 0.3 ENCODE dbSUPER 0.4 +8.2 8207 0.2 RF00994-210 LINC01395 HSALNG0088167-002 HSALNG0088167-003 TMEM45B BARX2
GH11J129594 Enhancer 0.5 Ensembl dbSUPER 0.3 +39.1 39087 0.2 EGR2 ZFHX2 ENSG00000281386 HSALNG0088162 LINC01395 BARX2 TMEM45B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01395 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01395 Gene

Latest Assembly
chr11:129,593,095-129,634,388
(GRCh38/hg38)
Size:
41,294 bases
Orientation:
Minus strand

Previous Assembly
chr11:129,482,011-129,487,164
(GRCh37/hg19 by Entrez Gene)
Size:
5,154 bases
Orientation:
Minus strand

Genomic View for LINC01395 Gene

Genes around LINC01395 on UCSC Golden Path with GeneCards custom track
LINC01395 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01395 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01395 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01395 Gene

Proteins for LINC01395 Gene

Post-translational modifications for LINC01395 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01395 Gene

Domains & Families for LINC01395 Gene

Gene Families for LINC01395 Gene

genes like me logo Genes that share domains with LINC01395: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01395 Gene

Function for LINC01395 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01395 Gene

Localization for LINC01395 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01395 Gene

Pathways & Interactions for LINC01395 Gene

PathCards logo

SuperPathways for LINC01395 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01395 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01395 Gene

Drugs & Compounds for LINC01395 Gene

No Compound Related Data Available

Transcripts for LINC01395 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01395 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A0B1_9606 lncRNA 986 4

RefSeq: NR_120582,

Ensembl: ENST00000631195 (view in UCSC) ,

LncBook: HSALNT0183343,

LNCipedia: lnc-NFRKB-2:3,

URS00009C1814_9606 lncRNA 4304 2

LncBook: HSALNT0183345,

NONCODE: NONHSAT160907.1,

URS00008BBE67_9606 lncRNA 973 2

LNCipedia: lnc-NFRKB-2:1,

NONCODE: NONHSAT025095.2,

URS00009C5D98_9606 lncRNA 973 2

LncBook: HSALNT0183344,

NONCODE: NONHSAT160906.1,

URS0001BE4A41_9606 lncRNA 9227 1

LncBook: HSALNT0183341,

LINC01395 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01395 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01395 Gene

No ASD Table

Relevant External Links for LINC01395 Gene

GeneLoc Exon Structure for
LINC01395

Expression for LINC01395 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01395

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01395 Gene

Orthologs for LINC01395 Gene

Evolution for LINC01395 Gene

ENSEMBL:
Gene Tree for LINC01395 (if available)
TreeFam:
Gene Tree for LINC01395 (if available)

No data available for Orthologs for LINC01395 Gene

Paralogs for LINC01395 Gene

No data available for Paralogs for LINC01395 Gene

Variants for LINC01395 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01395 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01395 Gene

Variant ID Type Subtype PubMed ID
nsv1043737 CNV loss 25217958
nsv832293 CNV loss 17160897
nsv832294 CNV gain 17160897

Additional Variant Information for LINC01395 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01395

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01395 Gene

Disorders for LINC01395 Gene

Additional Disease Information for LINC01395

No disorders were found for LINC01395 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01395 Gene

Publications for LINC01395 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01395 Gene

Sources for LINC01395 Gene