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Aliases for LINC01395 Gene

Subcategory (RNA class) for LINC01395 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01395 Gene

  • Long Intergenic Non-Protein Coding RNA 1395 2 3 5
  • TCONS_00019178 3

External Ids for LINC01395 Gene

Summaries for LINC01395 Gene

GeneCards Summary for LINC01395 Gene

LINC01395 (Long Intergenic Non-Protein Coding RNA 1395) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01395 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01395 Gene

Genomics for LINC01395 Gene

GeneHancer (GH) Regulatory Elements for LINC01395 Gene

Promoters and enhancers for LINC01395 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I129616 Enhancer 0.6 dbSUPER 0.8 -2.1 -2055 4.9 KLF1 CEBPB FEZF1 EP300 ZIC2 OSR2 JUND ZNF629 WT1 ZBTB20 LINC01395 GC11P129694
GH11I129636 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 -23.2 -23177 7.9 PKNOX1 INSM2 ZNF366 ZSCAN5C SCRT2 ZNF391 FOS SP3 CEBPB TSHZ1 BARX2 NFRKB LINC01395 GC11P129694
GH11I129608 Enhancer 0.6 dbSUPER 0.4 +6.0 5987 6.5 KLF1 HLF MAFG FEZF1 ZIC2 OSR2 ZNF316 NFE2 EMSY MAFK LINC01395 ENSG00000281386
GH11I129593 Enhancer 0.7 ENCODE dbSUPER 0.3 +23.9 23948 0.2 GATA3 RFX1 NFIB SCRT2 NEUROD1 MNT ENSG00000281386 LINC01395
GH11I129594 Enhancer 0.6 dbSUPER 0.3 +22.3 22257 2 PKNOX1 TEAD4 TAL1 ZFHX2 IKZF1 CREB1 NFE2 EGR2 ENSG00000281386 LINC01395
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01395 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01395 Gene

Genomic Locations for LINC01395 Gene
chr11:129,612,116-129,617,269
(GRCh38/hg38)
Size:
5,154 bases
Orientation:
Minus strand

Genomic View for LINC01395 Gene

Genes around LINC01395 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01395 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01395 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01395 Gene

Proteins for LINC01395 Gene

Post-translational modifications for LINC01395 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01395 Gene

Domains & Families for LINC01395 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01395 Gene

Function for LINC01395 Gene

Phenotypes From GWAS Catalog for LINC01395 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01395 Gene

Localization for LINC01395 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01395 Gene

Pathways & Interactions for LINC01395 Gene

SuperPathways for LINC01395 Gene

No Data Available

Interacting Proteins for LINC01395 Gene

Gene Ontology (GO) - Biological Process for LINC01395 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01395 Gene

Drugs & Compounds for LINC01395 Gene

No Compound Related Data Available

Transcripts for LINC01395 Gene

mRNA/cDNA for LINC01395 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01395 Gene

No ASD Table

Relevant External Links for LINC01395 Gene

GeneLoc Exon Structure for
LINC01395
ECgene alternative splicing isoforms for
LINC01395

Expression for LINC01395 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01395 Gene:

LINC01395
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01395 Gene

Orthologs for LINC01395 Gene

Evolution for LINC01395 Gene

ENSEMBL:
Gene Tree for LINC01395 (if available)
TreeFam:
Gene Tree for LINC01395 (if available)

No data available for Orthologs for LINC01395 Gene

Paralogs for LINC01395 Gene

No data available for Paralogs for LINC01395 Gene

Variants for LINC01395 Gene

Sequence variations from dbSNP and Humsavar for LINC01395 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000343862 -- 129,618,255(-) C/A upstream_transcript_variant
rs1000457480 -- 129,612,361(-) T/A non_coding_transcript_variant
rs1000756293 -- 129,611,980(-) C/T downstream_transcript_variant
rs1000881299 -- 129,617,129(-) C/T non_coding_transcript_variant
rs1001056600 -- 129,615,905(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01395 Gene

Variant ID Type Subtype PubMed ID
nsv1043737 CNV loss 25217958
nsv832293 CNV loss 17160897
nsv832294 CNV gain 17160897

Additional Variant Information for LINC01395 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01395

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01395 Gene

Disorders for LINC01395 Gene

Additional Disease Information for LINC01395

No disorders were found for LINC01395 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01395 Gene

Publications for LINC01395 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01395 Gene

Sources for LINC01395 Gene

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