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Aliases for LINC01395 Gene
Data sources for LINC01395 Gene:
Subcategory (RNA class) for LINC01395 Gene
lncRNA
Aliases for LINC01395 Gene
- Long Intergenic Non-Protein Coding RNA 1395 (HGNC, NCBI Entrez Gene, Ensembl)
- TCONS_00019178 (HGNC, NCBI Entrez Gene)
- NONHSAG010034.2 (NONCODE)
- HSALNG0088162 (LncBook)
- Lnc-NFRKB-2 (LNCipedia)
- LINC01395 (Ensembl)
External Ids for LINC01395 Gene
- HGNC: 50674
- NCBI Entrez Gene: 101929557
- Ensembl: ENSG00000281097
Previous GeneCards Identifiers for LINC01395 Gene
- GC11M129612
Summaries for LINC01395 Gene
GeneCards Summary for LINC01395 Gene
LINC01395 (Long Intergenic Non-Protein Coding RNA 1395) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for LINC01395 Gene
- HGNC (50674)
- NCBI Entrez Gene (101929557)
- Ensembl (ENSG00000281097)
- Open Targets Platform(ENSG00000281097)
- Search for LINC01395 at DataMed
- Search for LINC01395 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01395 Gene
Genomics for LINC01395 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01395 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J129621 | Enhancer | 0.7 | Ensembl dbSUPER | 0.4 | +13.3 | 13288 | 0.2 | FEZF1 EP300 ZNF629 OSR2 CEBPB ZBTB20 ZBTB44 | HSALNG0088167-002 HSALNG0088167-003 RF00994-210 LINC01395 TMEM45B BARX2 | |
| GH11J129612 | Enhancer | 0.8 | Ensembl dbSUPER | 0.3 | +22.0 | 21987 | 1.2 | FEZF1 ZNF316 NFE2 MAFG ZNF384 MAFF NR2F6 ESRRA KLF1 EGR2 | HSALNG0088166 HSALNG0088167-001 LINC01395 ENSG00000281386 TMEM45B BARX2 | |
| GH11J129593 | Enhancer | 0.7 | Ensembl ENCODE dbSUPER | 0.3 | +41.0 | 40987 | 0.4 | NFIB MNT RFX1 | ENSG00000281386 HSALNG0088162 LINC01395 BARX2 TMEM45B | |
| GH11J129626 | Enhancer | 0.3 | ENCODE dbSUPER | 0.4 | +8.2 | 8207 | 0.2 | RF00994-210 LINC01395 HSALNG0088167-002 HSALNG0088167-003 TMEM45B BARX2 | ||
| GH11J129594 | Enhancer | 0.5 | Ensembl dbSUPER | 0.3 | +39.1 | 39087 | 0.2 | EGR2 ZFHX2 | ENSG00000281386 HSALNG0088162 LINC01395 BARX2 TMEM45B |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01395 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01395 Gene
Latest Assembly
- chr11:129,593,095-129,634,388
- (GRCh38/hg38)
- Size:
- 41,294 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:129,482,011-129,487,164
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 5,154 bases
- Orientation:
- Minus strand
Genomic View for LINC01395 Gene
Genes around LINC01395 on UCSC Golden Path with GeneCards custom track
LINC01395 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q24.3 by HGNC
- 11q24.3 by Entrez Gene
- 11q24.3 by Ensembl
LINC01395 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01395 Gene
Proteins for LINC01395 Gene
Post-translational modifications for LINC01395 Gene
No Post-translational modifications
No data available for DME Specific Peptides for LINC01395 Gene
Domains & Families for LINC01395 Gene
Gene Families for LINC01395 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01395 Gene
Function for LINC01395 Gene
Phenotypes From GWAS Catalog for LINC01395 Gene
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01395 Gene
Localization for LINC01395 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01395 Gene
Transcripts for LINC01395 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01395 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000075A0B1_9606 | lncRNA | 986 | 4 |
RefSeq: NR_120582, Ensembl: ENST00000631195 (view in UCSC) , LncBook: HSALNT0183343, LNCipedia: lnc-NFRKB-2:3, |
| URS00009C1814_9606 | lncRNA | 4304 | 2 |
LncBook: HSALNT0183345, NONCODE: NONHSAT160907.1, |
| URS00008BBE67_9606 | lncRNA | 973 | 2 |
LNCipedia: lnc-NFRKB-2:1, NONCODE: NONHSAT025095.2, |
| URS00009C5D98_9606 | lncRNA | 973 | 2 |
LncBook: HSALNT0183344, NONCODE: NONHSAT160906.1, |
| URS0001BE4A41_9606 | lncRNA | 9227 | 1 |
LncBook: HSALNT0183341, |
LINC01395 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01395 Gene
- 1 NCBI additional mRNA sequence :
CRISPR products for research
Inhibitory RNAs for research
Clone products for research
Relevant External Links for LINC01395 Gene
- GeneLoc Exon Structure for
- LINC01395
Expression for LINC01395 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01395
No Expression Related Data Available
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01395 Gene
Orthologs for LINC01395 Gene
No data available for Orthologs for LINC01395 Gene
Paralogs for LINC01395 Gene
No data available for Paralogs for LINC01395 Gene
Variants for LINC01395 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for LINC01395 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01395
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01395 Gene
Disorders for LINC01395 Gene
Additional Disease Information for LINC01395
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for LINC01395 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01395 Gene
Publications for LINC01395 Gene
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3
Products for LINC01395 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
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- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01395
- Origene Custom Protein Services for LINC01395
- Browse OriGene Inhibitory RNA Products For LINC01395
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01395
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01395
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01395
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01395
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01395
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01395
Sources for LINC01395 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB