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Aliases for LINC01394 Gene

Subcategory (RNA class) for LINC01394 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01394 Gene

  • Long Intergenic Non-Protein Coding RNA 1394 2 3
  • TCONS_00012639 3

External Ids for LINC01394 Gene

Previous GeneCards Identifiers for LINC01394 Gene

  • GC00U936356
  • GC06U903651

Summaries for LINC01394 Gene

GeneCards Summary for LINC01394 Gene

LINC01394 (Long Intergenic Non-Protein Coding RNA 1394) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01394 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01394 Gene

Genomics for LINC01394 Gene

GeneHancer (GH) Regulatory Elements for LINC01394 Gene

Promoters and enhancers for LINC01394 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I001323 Enhancer 1.4 Ensembl ENCODE dbSUPER 550.8 -1.4 -1375 3.7 FOXA2 MLX ARID4B NEUROD1 DMAP1 BRCA1 ZNF48 ETS1 ATF7 FOS LINC01394 PIR53094
GH06I001321 Enhancer 0.9 ENCODE 550.8 +1.6 1649 2 FOXA2 ARID4B DMAP1 ZNF48 YY1 ATF7 RXRA MXD4 MIER2 REST LINC01394 FOXQ1
GH06I001309 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 0.4 +9.9 9903 8.6 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 ZNF143 PAF1 FOXQ1 EXOC2 LOC105374880 GC06M001309 LINC01394
GH06I001327 Enhancer 0.3 ENCODE 0.8 -4.3 -4323 0.9 REST LINC01394 PIR53094
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01394 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01394 Gene

Genomic Locations for LINC01394 Gene
chr6:1,321,698-1,324,022
(GRCh38/hg38)
Size:
2,325 bases
Orientation:
Minus strand

Genomic View for LINC01394 Gene

Genes around LINC01394 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01394 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01394 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01394 Gene

Proteins for LINC01394 Gene

Post-translational modifications for LINC01394 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01394 Gene

Domains & Families for LINC01394 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01394 Gene

Function for LINC01394 Gene

Phenotypes From GWAS Catalog for LINC01394 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01394 Gene

Localization for LINC01394 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01394 Gene

Pathways & Interactions for LINC01394 Gene

SuperPathways for LINC01394 Gene

No Data Available

Interacting Proteins for LINC01394 Gene

Gene Ontology (GO) - Biological Process for LINC01394 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01394 Gene

Drugs & Compounds for LINC01394 Gene

No Compound Related Data Available

Transcripts for LINC01394 Gene

mRNA/cDNA for LINC01394 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01394 Gene

No ASD Table

Relevant External Links for LINC01394 Gene

GeneLoc Exon Structure for
LINC01394
ECgene alternative splicing isoforms for
LINC01394

Expression for LINC01394 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01394 Gene:

LINC01394
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01394 Gene

Orthologs for LINC01394 Gene

Evolution for LINC01394 Gene

ENSEMBL:
Gene Tree for LINC01394 (if available)
TreeFam:
Gene Tree for LINC01394 (if available)

No data available for Orthologs for LINC01394 Gene

Paralogs for LINC01394 Gene

No data available for Paralogs for LINC01394 Gene

Variants for LINC01394 Gene

Sequence variations from dbSNP and Humsavar for LINC01394 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000065331 -- 1,328,563(-) T/C intron_variant
rs1000216028 -- 1,325,187(-) G/A/C non_coding_transcript_variant
rs1000462780 -- 1,324,240(-) C/T intron_variant
rs1000669378 -- 1,330,077(-) A/G intron_variant
rs1001230253 -- 1,330,317(-) A/C intron_variant

Additional Variant Information for LINC01394 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01394

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01394 Gene

Disorders for LINC01394 Gene

No disorders were found for LINC01394 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01394 Gene

Publications for LINC01394 Gene

No publications were found for LINC01394 Gene.

Products for LINC01394 Gene

Sources for LINC01394 Gene

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