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Aliases for LINC01393 Gene

Subcategory (RNA class) for LINC01393 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for LINC01393 Gene

  • Long Intergenic Non-Protein Coding RNA 1393 2 3 5

External Ids for LINC01393 Gene

Summaries for LINC01393 Gene

GeneCards Summary for LINC01393 Gene

LINC01393 (Long Intergenic Non-Protein Coding RNA 1393) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01393 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01393 Gene

Genomics for LINC01393 Gene

GeneHancer (GH) Regulatory Elements for LINC01393 Gene

Promoters and enhancers for LINC01393 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J114921 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 18.4 -151.2 -151243 12.9 HDGF SIN3A FEZF1 ZNF2 IRF4 YY1 GLIS2 ATF7 RUNX3 ZNF202 MDFIC GC07P114927 GC07M114915 LINC01393
GH07J115409 Enhancer 0.7 Ensembl ENCODE 4.5 +331.9 331930 1.9 MLLT1 ZNF24 RUNX3 SPI1 MDFIC LINC01393 GC07P115459 GC07P115309
GH07J115087 Enhancer 0.9 Ensembl ENCODE 0.4 +8.6 8589 1 FOXA2 JUN MAX RAD21 RFX5 YY1 TEAD3 POLR2A RCOR1 FOSL2 LINC01393 RAC1P6 LINC01392
GH07J115096 Enhancer 0.6 Ensembl ENCODE 0.4 +18.5 18507 1.1 JUND JUN FOS LINC01393 RAC1P6 LINC01392
GH07J115100 Enhancer 0.6 ENCODE 0.3 +21.2 21204 0.2 FOXA2 JUN HMG20A ZNF644 SP1 JUND FOS FOSL2 ZBTB12 LINC01393 RAC1P6 LINC01392
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01393 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01393 Gene

Genomic Locations for LINC01393 Gene
47,357 bases
Plus strand
47,357 bases
Plus strand

Genomic View for LINC01393 Gene

Genes around LINC01393 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01393 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01393 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01393 Gene

Proteins for LINC01393 Gene

Post-translational modifications for LINC01393 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01393 Gene

Domains & Families for LINC01393 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01393 Gene

Function for LINC01393 Gene

Phenotypes From GWAS Catalog for LINC01393 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01393 Gene

Localization for LINC01393 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01393 Gene

Pathways & Interactions for LINC01393 Gene

SuperPathways for LINC01393 Gene

No Data Available

Interacting Proteins for LINC01393 Gene

Gene Ontology (GO) - Biological Process for LINC01393 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01393 Gene

Drugs & Compounds for LINC01393 Gene

No Compound Related Data Available

Transcripts for LINC01393 Gene

mRNA/cDNA for LINC01393 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01393 Gene

No ASD Table

Relevant External Links for LINC01393 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01393 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01393 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01393 Gene:

genes like me logo Genes that share expression patterns with LINC01393: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01393 Gene

Orthologs for LINC01393 Gene

Evolution for LINC01393 Gene

Gene Tree for LINC01393 (if available)
Gene Tree for LINC01393 (if available)

No data available for Orthologs for LINC01393 Gene

Paralogs for LINC01393 Gene

No data available for Paralogs for LINC01393 Gene

Variants for LINC01393 Gene

Sequence variations from dbSNP and Humsavar for LINC01393 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000003092 -- 115,116,222(+) T/C intron_variant
rs1000020480 -- 115,121,437(+) G/T intron_variant
rs1000066261 -- 115,081,943(+) A/C intron_variant
rs1000093188 -- 115,115,549(+) A/G intron_variant
rs1000157903 -- 115,093,765(+) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01393 Gene

Variant ID Type Subtype PubMed ID
esv3614668 CNV loss 21293372
nsv7405 OTHER inversion 18451855

Additional Variant Information for LINC01393 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01393 Gene

Disorders for LINC01393 Gene

Additional Disease Information for LINC01393

No disorders were found for LINC01393 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01393 Gene

Publications for LINC01393 Gene

No publications were found for LINC01393 Gene.

Products for LINC01393 Gene

Sources for LINC01393 Gene

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