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Aliases for LINC01392 Gene

Subcategory (RNA class) for LINC01392 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01392 Gene

  • Long Intergenic Non-Protein Coding RNA 1392 2 3 5

External Ids for LINC01392 Gene

Summaries for LINC01392 Gene

GeneCards Summary for LINC01392 Gene

LINC01392 (Long Intergenic Non-Protein Coding RNA 1392) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01392 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01392 Gene

Genomics for LINC01392 Gene

GeneHancer (GH) Regulatory Elements for LINC01392 Gene

Promoters and enhancers for LINC01392 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07I115229 Enhancer 1 Ensembl ENCODE 550.8 +0.2 201 2.8 NFIB INSM2 KLF17 FEZF1 ZNF2 BRCA1 ZNF366 ZSCAN5C SMARCC2 ZNF391 LINC01392 ENSG00000199764
GH07I115230 Enhancer 0.4 ENCODE 550.8 +1.7 1713 0.2 OSR2 ATF2 TCF7L2 LINC01392 ENSG00000199764
GH07I115135 Enhancer 0.8 Ensembl ENCODE 0.2 +95.9 95854 0.6 SOX5 NFIA FOXA3 HLF CEBPB TEAD3 NFIL3 CEBPA TCF7 TCF7L2 RAC1P6 LINC01393 LINC01392
GH07I115273 Enhancer 0.5 UCNEbase 0.3 -42.0 -42019 0.5 NFE2L2 GC07M115299 LINC01392
GH07I115299 Enhancer 0.6 UCNEbase ENCODE 0.2 -69.1 -69052 1.3 GC07M115299 LINC01392
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01392 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01392 Gene

Genomic Locations for LINC01392 Gene
chr7:115,061,537-115,231,355
(GRCh38/hg38)
Size:
169,819 bases
Orientation:
Minus strand
chr7:114,701,591-114,871,409
(GRCh37/hg19)

Genomic View for LINC01392 Gene

Genes around LINC01392 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01392 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01392 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01392 Gene

Proteins for LINC01392 Gene

Post-translational modifications for LINC01392 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01392 Gene

Domains & Families for LINC01392 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01392 Gene

Function for LINC01392 Gene

Phenotypes From GWAS Catalog for LINC01392 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01392 Gene

Localization for LINC01392 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01392 Gene

Pathways & Interactions for LINC01392 Gene

SuperPathways for LINC01392 Gene

No Data Available

Interacting Proteins for LINC01392 Gene

Gene Ontology (GO) - Biological Process for LINC01392 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01392 Gene

Drugs & Compounds for LINC01392 Gene

No Compound Related Data Available

Transcripts for LINC01392 Gene

mRNA/cDNA for LINC01392 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01392 Gene

No ASD Table

Relevant External Links for LINC01392 Gene

GeneLoc Exon Structure for
LINC01392
ECgene alternative splicing isoforms for
LINC01392

Expression for LINC01392 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01392 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01392 Gene:

LINC01392
genes like me logo Genes that share expression patterns with LINC01392: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01392 Gene

Orthologs for LINC01392 Gene

Evolution for LINC01392 Gene

ENSEMBL:
Gene Tree for LINC01392 (if available)
TreeFam:
Gene Tree for LINC01392 (if available)

No data available for Orthologs for LINC01392 Gene

Paralogs for LINC01392 Gene

No data available for Paralogs for LINC01392 Gene

Variants for LINC01392 Gene

Sequence variations from dbSNP and Humsavar for LINC01392 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000029570 -- 115,160,872(-) G/C intron_variant
rs1000045685 -- 115,208,179(-) A/G intron_variant
rs1000078772 -- 115,206,313(-) A/G intron_variant
rs1000083083 -- 115,159,603(-) T/C intron_variant
rs1000092424 -- 115,212,461(-) C/G intron_variant

Additional Variant Information for LINC01392 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01392

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01392 Gene

Disorders for LINC01392 Gene

Additional Disease Information for LINC01392

No disorders were found for LINC01392 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01392 Gene

Publications for LINC01392 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01392 Gene

Sources for LINC01392 Gene

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