Aliases for LINC01391 Gene

Data sources for LINC01391 Gene:

Subcategory (RNA class) for LINC01391 Gene


Aliases for LINC01391 Gene

External Ids for LINC01391 Gene

Summaries for LINC01391 Gene

GeneCards Summary for LINC01391 Gene

LINC01391 (Long Intergenic Non-Protein Coding RNA 1391) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01391 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01391 Gene

Genomics for LINC01391 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01391 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J138948 Enhancer 0.7 ENCODE dbSUPER 250.7 -1.7 -1678 0.9 ETS1 TAF1 MEIS2 POU5F1 EZH2 NANOG POLR2A FOXL2NB HSALNG0029311 LINC01391 HSALNG0029312 MRPS22
GH03J138914 Promoter/Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas 11.2 +31.7 31652 2.5 TBP ZBTB10 CEBPA MNT IKZF1 IRF2 ZFP64 MBD2 ZNF217 CTCF lnc-FOXL2-5 CEP70 PIK3CB FAIM LINC01391 FOXL2 FOXL2NB HSALNG0029307 RF00017-4130
GH03J138923 Enhancer 0.9 Ensembl ENCODE 11.6 +23.9 23854 0.8 MXD4 CEBPA CTCF CEBPB REST HCFC1 TRIM22 SMC3 RAD21 RFX5 LINC01391 FOXL2 FOXL2NB CEP70 FAIM lnc-FOXL2-5 PIK3CB
GH03J138979 Enhancer 0.7 Ensembl 11.7 -32.5 -32460 0.7 IKZF1 CTCF REST RAD21 FOXA2 SMC3 FOXA1 NFE2 ZNF143 GLIS1 PRR23C LINC01391 FOXL2 FOXL2NB HSALNG0029314 MRPS22
GH03J138942 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 0.7 +2.2 2198 6.2 TBP MNT IKZF1 SMAD5 MBD2 BHLHE40 NONO ZNF395 REST GTF2E2 FOXL2 FOXL2NB HSALNG0029311 DBR1 DZIP1L ENSG00000272656 CEP70 ACTG1P1 COPB2 MRAS
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01391 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01391 Gene

Latest Assembly
17,580 bases
Minus strand

Previous Assembly
(GRCh37/hg19 by Entrez Gene)
8,832 bases
Minus strand

(GRCh37/hg19 by Ensembl)
8,832 bases
Minus strand

Genomic View for LINC01391 Gene

Genes around LINC01391 on UCSC Golden Path with GeneCards custom track
LINC01391 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01391 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01391 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01391 Gene

Proteins for LINC01391 Gene

Post-translational modifications for LINC01391 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01391 Gene

Domains & Families for LINC01391 Gene

Gene Families for LINC01391 Gene

genes like me logo Genes that share domains with LINC01391: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01391 Gene

Function for LINC01391 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01391 Gene

Localization for LINC01391 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01391 Gene

Pathways & Interactions for LINC01391 Gene

PathCards logo

SuperPathways for LINC01391 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01391 Gene


No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01391 Gene

Drugs & Compounds for LINC01391 Gene

No Compound Related Data Available

Transcripts for LINC01391 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01391 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000002F901_9606 lncRNA 3541 5

RefSeq: NR_121649,

Ensembl: ENST00000495287 (view in UCSC) ,

LncBook: HSALNT0061161,

LNCipedia: LINC01391:1,


URS00000EDBAD_9606 lncRNA 865 4

Ensembl: ENST00000483650 (view in UCSC) ,

LncBook: HSALNT0061163,

LNCipedia: LINC01391:2,


URS000047D55A_9606 lncRNA 485 4

Ensembl: ENST00000477059 (view in UCSC) ,

LncBook: HSALNT0061164,

LNCipedia: LINC01391:3,


URS00009B765B_9606 lncRNA 3889 2

LncBook: HSALNT0061162,


URS0000D6E3B2_9606 lncRNA 4393 1

LNCipedia: LINC01391:4,

LINC01391 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01391 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01391 Gene

No ASD Table

Relevant External Links for LINC01391 Gene

GeneLoc Exon Structure for

Expression for LINC01391 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01391 Gene

genes like me logo Genes that share expression patterns with LINC01391: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01391 Gene

Orthologs for LINC01391 Gene

Evolution for LINC01391 Gene

Gene Tree for LINC01391 (if available)
Gene Tree for LINC01391 (if available)

No data available for Orthologs for LINC01391 Gene

Paralogs for LINC01391 Gene

No data available for Paralogs for LINC01391 Gene

Variants for LINC01391 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01391 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01391 Gene

Variant ID Type Subtype PubMed ID
dgv4908n100 CNV gain 25217958
nsv591854 CNV gain 21841781

Additional Variant Information for LINC01391 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01391 Gene

Disorders for LINC01391 Gene

Additional Disease Information for LINC01391

No disorders were found for LINC01391 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01391 Gene

Publications for LINC01391 Gene

  1. Piplartine suppresses proliferation and invasion of hepatocellular carcinoma by LINC01391-modulated Wnt/β-catenin pathway inactivation through ICAT. (PMID: 31207322) Fan X … Ji J (Cancer letters 2019) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01391 Gene

Sources for LINC01391 Gene