Aliases for LINC01391 Gene

Subcategory (RNA class) for LINC01391 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01391 Gene

  • Long Intergenic Non-Protein Coding RNA 1391 2 3 5
  • LINC01391 2 5 165
  • NONHSAG036205.2 91
  • HSALNG0029310 164

External Ids for LINC01391 Gene

Summaries for LINC01391 Gene

GeneCards Summary for LINC01391 Gene

LINC01391 (Long Intergenic Non-Protein Coding RNA 1391) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01391 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01391 Gene

Genomics for LINC01391 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01391 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J138944 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 600.7 +0.9 891 3.5 CTCF ZNF512 JUND PHF21A EZH2 HDAC1 NRF1 NONO MGA TARDBP FOXL2 FOXL2NB LINC01391 DBR1 DZIP1L ENSG00000272656 ACTG1P1 COPB2 lnc-FOXL2-5 PIK3CB
GH03J138948 Enhancer 0.7 ENCODE dbSUPER 600.7 -1.7 -1678 0.9 TEAD4 EZH2 POLR2A ETS1 MEIS2 TAF1 NANOG POU5F1 FOXL2NB LINC01391 HSALNG0029314 MRPS22
GH03J138914 Promoter/Enhancer 1.6 FANTOM5 ENCODE CraniofacialAtlas 11.2 +31.7 31652 2.5 HNRNPL GATAD2A CTCF PRDM10 ZNF629 LEF1 IKZF1 ZNF692 RCOR2 JUND MN298041 lnc-FOXL2-5 CEP70 PIK3CB FAIM FOXL2 FOXL2NB LINC01391
GH03J138923 Enhancer 0.9 Ensembl ENCODE 11.6 +23.9 23854 0.8 GATAD2A CTCF JUND FOXA1 ZNF143 PKNOX1 REST RAD21 TRIM22 YY1 LINC01391 FOXL2 FOXL2NB CEP70 FAIM lnc-FOXL2-5 PIK3CB
GH03J138942 Promoter/Enhancer 1.3 Ensembl ENCODE dbSUPER 0.7 +4.0 3985 2.6 ZNF512 IKZF1 JUND POLR2A REST ZNF740 CTCF BRD9 EZH2 SOX6 DBR1 CEP70 DZIP1L ACTG1P1 COPB2 MRAS FOXL2 LINC01391 lnc-FOXL2-5 PIK3CB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01391 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01391 Gene

Genomic Locations for LINC01391 Gene
chr3:138,929,929-138,947,507
(GRCh38/hg38)
Size:
17,579 bases
Orientation:
Minus strand
chr3:138,654,031-138,662,862
(GRCh37/hg19)
Size:
8,832 bases
Orientation:
Minus strand

Genomic View for LINC01391 Gene

Genes around LINC01391 on UCSC Golden Path with GeneCards custom track
LINC01391 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01391 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01391 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01391 Gene

Proteins for LINC01391 Gene

Post-translational modifications for LINC01391 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01391 Gene

Domains & Families for LINC01391 Gene

Gene Families for LINC01391 Gene

genes like me logo Genes that share domains with LINC01391: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01391 Gene

Function for LINC01391 Gene

Phenotypes From GWAS Catalog for LINC01391 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01391 Gene

Localization for LINC01391 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01391 Gene

Pathways & Interactions for LINC01391 Gene

PathCards logo

SuperPathways for LINC01391 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01391 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01391 Gene

Drugs & Compounds for LINC01391 Gene

No Compound Related Data Available

Transcripts for LINC01391 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01391 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000002F901_9606 lncRNA 3538 6

HGNC: 50666,

RefSeq: NR_121649,

Ensembl: ENST00000495287 (view in UCSC) ,

LncBook: HSALNT0061161,

LNCipedia: LINC01391:1,

NONCODE: NONHSAT092344.2,

URS00000EDBAD_9606 lncRNA 865 4

Ensembl: ENST00000483650 (view in UCSC) ,

LncBook: HSALNT0061163,

LNCipedia: LINC01391:2,

NONCODE: NONHSAT092345.2,

URS000047D55A_9606 lncRNA 483 4

Ensembl: ENST00000477059 (view in UCSC) ,

LncBook: HSALNT0061164,

LNCipedia: LINC01391:3,

NONCODE: NONHSAT092346.2,

URS00009B765B_9606 lncRNA 3889 2

LncBook: HSALNT0061162,

NONCODE: NONHSAT196325.1,

URS0000D6E3B2_9606 lncRNA 4391 1

LNCipedia: LINC01391:4,

LINC01391 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01391 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01391 Gene

No ASD Table

Relevant External Links for LINC01391 Gene

GeneLoc Exon Structure for
LINC01391

Expression for LINC01391 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01391 Gene

genes like me logo Genes that share expression patterns with LINC01391: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01391 Gene

Orthologs for LINC01391 Gene

Evolution for LINC01391 Gene

ENSEMBL:
Gene Tree for LINC01391 (if available)
TreeFam:
Gene Tree for LINC01391 (if available)

No data available for Orthologs for LINC01391 Gene

Paralogs for LINC01391 Gene

No data available for Paralogs for LINC01391 Gene

Variants for LINC01391 Gene

Additional dbSNP identifiers (rs#s) for LINC01391 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01391 Gene

Variant ID Type Subtype PubMed ID
dgv4908n100 CNV gain 25217958
nsv591854 CNV gain 21841781

Additional Variant Information for LINC01391 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01391

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01391 Gene

Disorders for LINC01391 Gene

Additional Disease Information for LINC01391

No disorders were found for LINC01391 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01391 Gene

Publications for LINC01391 Gene

  1. Piplartine suppresses proliferation and invasion of hepatocellular carcinoma by LINC01391-modulated Wnt/β-catenin pathway inactivation through ICAT. (PMID: 31207322) Fan X … Ji J (Cancer letters 2019) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01391 Gene

Sources for LINC01391 Gene