Aliases for LINC01389 Gene

Subcategory (RNA class) for LINC01389 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01389 Gene

  • Long Intergenic Non-Protein Coding RNA 1389 2 3 5
  • LINC01389 2 168
  • NONHSAG001373 92
  • HSALNG0003395 167

External Ids for LINC01389 Gene

Summaries for LINC01389 Gene

GeneCards Summary for LINC01389 Gene

LINC01389 (Long Intergenic Non-Protein Coding RNA 1389) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01389 include Aortic Aneurysm, Familial Thoracic 11 and Cataract 34, Multiple Types.

Additional gene information for LINC01389 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01389 Gene

Genomics for LINC01389 Gene

GeneHancer (GH) Regulatory Elements for LINC01389 Gene

Promoters and enhancers for LINC01389 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01389 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01389 Gene

Genomic Locations for LINC01389 Gene
chr1:47,380,715-47,437,695
(GRCh38/hg38)
Size:
56,981 bases
Orientation:
Minus strand

Genomic View for LINC01389 Gene

Genes around LINC01389 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01389 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01389 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01389 Gene

Proteins for LINC01389 Gene

Post-translational modifications for LINC01389 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01389 Gene

Domains & Families for LINC01389 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01389 Gene

Function for LINC01389 Gene

Phenotypes From GWAS Catalog for LINC01389 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01389 Gene

Localization for LINC01389 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01389 Gene

Pathways & Interactions for LINC01389 Gene

PathCards logo

SuperPathways for LINC01389 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01389 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01389 Gene

Drugs & Compounds for LINC01389 Gene

No Compound Related Data Available

Transcripts for LINC01389 Gene

mRNA/cDNA for LINC01389 Gene

13 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
7 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01389 Gene

No ASD Table

Relevant External Links for LINC01389 Gene

GeneLoc Exon Structure for
LINC01389

Expression for LINC01389 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01389 Gene

genes like me logo Genes that share expression patterns with LINC01389: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01389 Gene

Orthologs for LINC01389 Gene

Evolution for LINC01389 Gene

ENSEMBL:
Gene Tree for LINC01389 (if available)
TreeFam:
Gene Tree for LINC01389 (if available)

No data available for Orthologs for LINC01389 Gene

Paralogs for LINC01389 Gene

No data available for Paralogs for LINC01389 Gene

Variants for LINC01389 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for LINC01389 Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
639324 Uncertain Significance: Congenital primary aphakia; Anterior segment mesenchymal dysgenesis 47,417,150(-) G/GGCCCGCT NONSENSE
643964 Uncertain Significance: Congenital primary aphakia; Anterior segment mesenchymal dysgenesis 47,417,208(-) C/T MISSENSE_VARIANT
643978 Uncertain Significance: Congenital primary aphakia; Anterior segment mesenchymal dysgenesis 47,416,842(-) C/T MISSENSE_VARIANT
646437 Uncertain Significance: Congenital primary aphakia; Anterior segment mesenchymal dysgenesis 47,417,027(-) C/T MISSENSE_VARIANT
650898 Uncertain Significance: Congenital primary aphakia; Anterior segment mesenchymal dysgenesis 47,416,719(-) A/G MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for LINC01389 Gene

Additional Variant Information for LINC01389 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01389

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01389 Gene

Disorders for LINC01389 Gene

MalaCards: The human disease database

(2) MalaCards diseases for LINC01389 Gene - From: GeneCards

Disorder Aliases PubMed IDs
aortic aneurysm, familial thoracic 11
  • aortic aneurysm, familial thoracic 11, susceptibility to
cataract 34, multiple types
  • ctrct34
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01389

genes like me logo Genes that share disorders with LINC01389: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01389 Gene

Publications for LINC01389 Gene

No publications were found for LINC01389 Gene.

Products for LINC01389 Gene

Sources for LINC01389 Gene