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Aliases for LINC01388 Gene

Subcategory (RNA class) for LINC01388 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01388 Gene

  • Long Intergenic Non-Protein Coding RNA 1388 2 3 5
  • TCONS_l2_00029888 3

External Ids for LINC01388 Gene

Previous GeneCards Identifiers for LINC01388 Gene

  • GC09M000113
  • GC09M000104
  • GC09M000105
  • GC09M000107
  • GC09M000108
  • GC09M000110
  • GC09M000114
  • GC09M000115

Summaries for LINC01388 Gene

GeneCards Summary for LINC01388 Gene

LINC01388 (Long Intergenic Non-Protein Coding RNA 1388) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01388 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01388 Gene

Genomics for LINC01388 Gene

GeneHancer (GH) Regulatory Elements for LINC01388 Gene

Promoters and enhancers for LINC01388 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH09J000112 Enhancer 0.9 FANTOM5 Ensembl 650.7 0.0 -4 2.8 NFIB BMI1 ZIC2 ZNF335 ZSCAN29 PRDM10 EZH2 NCOA6 L3MBTL2 RNF2 PIR48620 LINC01388 GC09P000118 GC09P000117 PIR36916 PIR58570 CBWD1 WASHC1 FOXD4 GC09M000091
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01388 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01388 Gene

Genomic Locations for LINC01388 Gene
chr9:100,994-114,247
(GRCh38/hg38)
Size:
13,254 bases
Orientation:
Minus strand
chr9:112,716-113,754
(GRCh37/hg19)
Size:
1,039 bases
Orientation:
Minus strand

Genomic View for LINC01388 Gene

Genes around LINC01388 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01388 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01388 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01388 Gene

Proteins for LINC01388 Gene

Post-translational modifications for LINC01388 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01388 Gene

Domains & Families for LINC01388 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01388 Gene

Function for LINC01388 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01388 Gene

Localization for LINC01388 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01388 Gene

Pathways & Interactions for LINC01388 Gene

SuperPathways for LINC01388 Gene

No Data Available

Interacting Proteins for LINC01388 Gene

Gene Ontology (GO) - Biological Process for LINC01388 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01388 Gene

Drugs & Compounds for LINC01388 Gene

No Compound Related Data Available

Transcripts for LINC01388 Gene

mRNA/cDNA for LINC01388 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01388 Gene

No ASD Table

Relevant External Links for LINC01388 Gene

GeneLoc Exon Structure for
LINC01388
ECgene alternative splicing isoforms for
LINC01388

Expression for LINC01388 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01388 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01388 Gene:

LINC01388
genes like me logo Genes that share expression patterns with LINC01388: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01388 Gene

Orthologs for LINC01388 Gene

Evolution for LINC01388 Gene

ENSEMBL:
Gene Tree for LINC01388 (if available)
TreeFam:
Gene Tree for LINC01388 (if available)

No data available for Orthologs for LINC01388 Gene

Paralogs for LINC01388 Gene

No data available for Paralogs for LINC01388 Gene

Variants for LINC01388 Gene

Sequence variations from dbSNP and Humsavar for LINC01388 Gene

SNP ID Clin Chr 09 pos Variation AA Info Type
rs1000192891 -- 114,434(-) C/T upstream_transcript_variant
rs1000449126 -- 104,308(-) G/A intron_variant
rs1000555740 -- 109,714(-) T/G intron_variant, non_coding_transcript_variant
rs1000586696 -- 109,876(-) C/T intron_variant, non_coding_transcript_variant
rs1000799765 -- 115,565(-) A/G upstream_transcript_variant

Additional Variant Information for LINC01388 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01388

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01388 Gene

Disorders for LINC01388 Gene

No disorders were found for LINC01388 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01388 Gene

Publications for LINC01388 Gene

  1. Diverse fates of paralogs following segmental duplication of telomeric genes. (PMID: 15233989) Wong A … Ledbetter DH (Genomics 2004) 3 58

Products for LINC01388 Gene

Sources for LINC01388 Gene

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