Aliases for LINC01386 Gene

Subcategory (RNA class) for LINC01386 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01386 Gene

  • Long Intergenic Non-Protein Coding RNA 1386 2 3 5
  • LINC01386 2 170
  • NONHSAG040702 94
  • HSALNG0042635 169

External Ids for LINC01386 Gene

Summaries for LINC01386 Gene

GeneCards Summary for LINC01386 Gene

LINC01386 (Long Intergenic Non-Protein Coding RNA 1386) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01386 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01386 Gene

Genomics for LINC01386 Gene

GeneHancer (GH) Regulatory Elements for LINC01386 Gene

Promoters and enhancers for LINC01386 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J073471 Enhancer 0.2 ENCODE 750.6 +1.4 1357 1 LINC01386 BTF3 LINC01385
GH05J073443 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.9 +26.5 26507 6.7 SIN3A ZBTB6 POLR2A USF2 ZNF362 L3MBTL2 MAX POU5F1 MNT MTA3 FOXD1-AS1 lnc-FOXD1-9 lnc-ANKRA2-8 piR-50212 LINC01385 LINC01386 LINC02230 LINC01333 LINC01335 ENSG00000223497
GH05J073215 Promoter/Enhancer 1.5 FANTOM5 ENCODE CraniofacialAtlas 10.4 +256.8 256783 1.3 CTCF ZBTB6 RBPJ POLR2A L3MBTL2 RAD21 ZNF121 MNT ZBTB33 ELF3 ANKRA2 TMEM174 LINC01386 ENSG00000244061 TNPO1 FOXD1 ENSG00000249743 piR-41306-217 LOC340090
GH05J073544 Enhancer 1.1 Ensembl ENCODE 10.6 -71.9 -71932 1.8 SREBF1 LCORL MLX RBPJ USF2 NR2F6 ATF1 CREB1 MIXL1 NFYC UTP15 ANKRA2 LINC01386 lnc-FOXD1-16 HSALNG0042640
GH05J073378 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas 10.2 +94.3 94280 1.4 ZBTB6 CTBP1 HDGF BCL6B SP7 ZNF680 GLIS2 PKNOX1 ZIC2 ZBTB8A LINC01386 TMEM171 BTF3 ENSG00000249149 lnc-BTF3-4 piR-48325-120
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01386 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01386 Gene

Genomic Locations for LINC01386 Gene
chr5:73,454,187-73,472,966
(GRCh38/hg38)
Size:
18,780 bases
Orientation:
Minus strand
chr5:72,750,012-72,768,721
(GRCh37/hg19)
Size:
18,710 bases
Orientation:
Minus strand

Genomic View for LINC01386 Gene

Genes around LINC01386 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01386 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01386 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01386 Gene

Proteins for LINC01386 Gene

Post-translational modifications for LINC01386 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01386 Gene

Domains & Families for LINC01386 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01386 Gene

Function for LINC01386 Gene

Phenotypes From GWAS Catalog for LINC01386 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01386 Gene

Localization for LINC01386 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01386 Gene

Pathways & Interactions for LINC01386 Gene

PathCards logo

SuperPathways for LINC01386 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01386 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01386 Gene

Drugs & Compounds for LINC01386 Gene

No Compound Related Data Available

Transcripts for LINC01386 Gene

mRNA/cDNA for LINC01386 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(2) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01386 Gene

No ASD Table

Relevant External Links for LINC01386 Gene

GeneLoc Exon Structure for
LINC01386
ECgene alternative splicing isoforms for
LINC01386

Expression for LINC01386 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01386 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01386 Gene:

LINC01386
genes like me logo Genes that share expression patterns with LINC01386: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01386 Gene

Orthologs for LINC01386 Gene

Evolution for LINC01386 Gene

ENSEMBL:
Gene Tree for LINC01386 (if available)
TreeFam:
Gene Tree for LINC01386 (if available)

No data available for Orthologs for LINC01386 Gene

Paralogs for LINC01386 Gene

No data available for Paralogs for LINC01386 Gene

Variants for LINC01386 Gene

Sequence variations from dbSNP and Humsavar for LINC01386 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000367117 -- 73,473,070(-) A/C/G upstream_transcript_variant
rs1000533022 -- 73,463,770(-) G/A/T intron_variant
rs1000831335 -- 73,466,322(-) G/A intron_variant
rs1000850223 -- 73,456,875(-) G/A intron_variant
rs1000925105 -- 73,457,189(-) A/C intron_variant

Additional Variant Information for LINC01386 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01386

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01386 Gene

Disorders for LINC01386 Gene

Additional Disease Information for LINC01386

No disorders were found for LINC01386 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01386 Gene

Publications for LINC01386 Gene

No publications were found for LINC01386 Gene.

No data available for External Links for LINC01386 Gene

Products for LINC01386 Gene

Sources for LINC01386 Gene