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Aliases for LINC01386 Gene

Subcategory (RNA class) for LINC01386 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01386 Gene

  • Long Intergenic Non-Protein Coding RNA 1386 2 3 5

External Ids for LINC01386 Gene

Summaries for LINC01386 Gene

GeneCards Summary for LINC01386 Gene

LINC01386 (Long Intergenic Non-Protein Coding RNA 1386) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01386 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01386 Gene

Genomics for LINC01386 Gene

GeneHancer (GH) Regulatory Elements for LINC01386 Gene

Promoters and enhancers for LINC01386 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I073471 Enhancer 0.2 ENCODE 550.8 +1.4 1357 1 LINC01386 BTF3 GC05M073449 LINC01385
GH05I073215 Enhancer 1.5 FANTOM5 Ensembl ENCODE 10.4 +256.8 256802 1.3 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ZNF143 KLF13 MXD4 REST ZNF592 ANKRA2 TMEM174 LINC01386 TNPO1 FOXD1 ENSG00000249743 LOC105379031
GH05I073541 Enhancer 1 Ensembl ENCODE 10.6 -69.0 -68984 2.7 ELF3 FOXA2 ZSCAN4 ZNF48 RARA ZNF366 FOS CREM IKZF2 ELF1 UTP15 ANKRA2 LINC01386 ARHGEF28 FUNDC2P1
GH05I073201 Enhancer 1 Ensembl ENCODE 9.9 +270.9 270938 0.9 ELF3 PKNOX1 RB1 ZNF2 ZNF48 ZSCAN9 RAD21 YY1 SLC30A9 E2F8 LOC340090 ANKRA2 UTP15 TMEM174 TMEM171 TNPO1 LINC01386 ENSG00000249743
GH05I073544 Enhancer 0.9 ENCODE 10.6 -71.9 -71887 1.7 FOXA2 MLX ARID4B DMAP1 ZNF48 ZNF207 SP5 NFYC MIER2 PPARG UTP15 ANKRA2 LINC01386 FUNDC2P1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01386 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01386 Gene

Genomic Locations for LINC01386 Gene
chr5:73,454,187-73,472,966
(GRCh38/hg38)
Size:
18,780 bases
Orientation:
Minus strand
chr5:72,750,012-72,768,721
(GRCh37/hg19)

Genomic View for LINC01386 Gene

Genes around LINC01386 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01386 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01386 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01386 Gene

Proteins for LINC01386 Gene

Post-translational modifications for LINC01386 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01386 Gene

Domains & Families for LINC01386 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01386 Gene

Function for LINC01386 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01386 Gene

Localization for LINC01386 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01386 Gene

Pathways & Interactions for LINC01386 Gene

SuperPathways for LINC01386 Gene

No Data Available

Interacting Proteins for LINC01386 Gene

Gene Ontology (GO) - Biological Process for LINC01386 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01386 Gene

Drugs & Compounds for LINC01386 Gene

No Compound Related Data Available

Transcripts for LINC01386 Gene

mRNA/cDNA for LINC01386 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01386 Gene

No ASD Table

Relevant External Links for LINC01386 Gene

GeneLoc Exon Structure for
LINC01386
ECgene alternative splicing isoforms for
LINC01386

Expression for LINC01386 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01386 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01386 Gene:

LINC01386
genes like me logo Genes that share expression patterns with LINC01386: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01386 Gene

Orthologs for LINC01386 Gene

Evolution for LINC01386 Gene

ENSEMBL:
Gene Tree for LINC01386 (if available)
TreeFam:
Gene Tree for LINC01386 (if available)

No data available for Orthologs for LINC01386 Gene

Paralogs for LINC01386 Gene

No data available for Paralogs for LINC01386 Gene

Variants for LINC01386 Gene

Sequence variations from dbSNP and Humsavar for LINC01386 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000367117 -- 73,473,070(-) A/C/G upstream_transcript_variant
rs1000533022 -- 73,463,770(-) G/A/T intron_variant
rs1000831335 -- 73,466,322(-) G/A intron_variant
rs1000850223 -- 73,456,875(-) G/A intron_variant
rs1000925105 -- 73,457,189(-) A/C intron_variant

Additional Variant Information for LINC01386 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01386

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01386 Gene

Disorders for LINC01386 Gene

Additional Disease Information for LINC01386

No disorders were found for LINC01386 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01386 Gene

Publications for LINC01386 Gene

No publications were found for LINC01386 Gene.

Products for LINC01386 Gene

Sources for LINC01386 Gene

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