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Aliases for LINC01385 Gene

Subcategory (RNA class) for LINC01385 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01385 Gene

  • Long Intergenic Non-Protein Coding RNA 1385 2 3 5
  • TCONS_00009424 3

External Ids for LINC01385 Gene

Summaries for LINC01385 Gene

GeneCards Summary for LINC01385 Gene

LINC01385 (Long Intergenic Non-Protein Coding RNA 1385) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01385 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01385 Gene

Genomics for LINC01385 Gene

GeneHancer (GH) Regulatory Elements for LINC01385 Gene

Promoters and enhancers for LINC01385 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J073451 Enhancer 1.2 Ensembl ENCODE dbSUPER 650.7 +0.0 40 0.6 ATF1 RB1 ZNF2 RAD21 ZNF335 GLIS2 SCRT2 ZNF143 CREM EGR2 LINC01385 BTF3 GC05M073449 LINC01386
GH05J073443 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 15 -5.2 -5221 6.3 PKNOX1 ATF1 SIN3A ZNF2 YY1 GLIS2 ZNF213 ZNF202 ZNF263 SP3 GC05M073448 GC05M073447 FOXD1-AS1 ANKRA2 LINC01385 LINC01386 LINC02230 ENSG00000223497 LINC01335 LINC01333
GH05J073454 Enhancer 0.7 ENCODE 0.7 +3.1 3133 0.2 CTCF USF1 MAX SIN3A RAD21 ZNF143 SMC3 ZNF600 ZNF362 ZNF10 LINC01385 GC05M073449 LINC01386
GH05J073464 Enhancer 0.6 ENCODE 0.4 +12.9 12944 0.7 JUN ZNF10 MZF1 ATF2 OSR2 ZNF335 MCM7 PRDM6 ZNF692 BTF3 LINC01386 GC05M073449 LINC01385
GH05J073471 Enhancer 0.2 ENCODE 0.3 +20.1 20111 1 LINC01386 BTF3 GC05M073449 LINC01385
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01385 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01385 Gene

Genomic Locations for LINC01385 Gene
chr5:73,451,498-73,453,395
(GRCh38/hg38)
Size:
1,898 bases
Orientation:
Plus strand
chr5:72,747,323-72,749,220
(GRCh37/hg19)
Size:
1,898 bases
Orientation:
Plus strand

Genomic View for LINC01385 Gene

Genes around LINC01385 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01385 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01385 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for LINC01385 Gene

Proteins for LINC01385 Gene

Post-translational modifications for LINC01385 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01385 Gene

Domains & Families for LINC01385 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01385 Gene

Function for LINC01385 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01385 Gene

Localization for LINC01385 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01385 Gene

Pathways & Interactions for LINC01385 Gene

SuperPathways for LINC01385 Gene

No Data Available

Interacting Proteins for LINC01385 Gene

Gene Ontology (GO) - Biological Process for LINC01385 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01385 Gene

Drugs & Compounds for LINC01385 Gene

No Compound Related Data Available

Transcripts for LINC01385 Gene

mRNA/cDNA for LINC01385 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01385 Gene

No ASD Table

Relevant External Links for LINC01385 Gene

GeneLoc Exon Structure for
LINC01385
ECgene alternative splicing isoforms for
LINC01385

Expression for LINC01385 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01385 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01385 Gene:

LINC01385
genes like me logo Genes that share expression patterns with LINC01385: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01385 Gene

Orthologs for LINC01385 Gene

Evolution for LINC01385 Gene

ENSEMBL:
Gene Tree for LINC01385 (if available)
TreeFam:
Gene Tree for LINC01385 (if available)

No data available for Orthologs for LINC01385 Gene

Paralogs for LINC01385 Gene

No data available for Paralogs for LINC01385 Gene

Variants for LINC01385 Gene

Additional Variant Information for LINC01385 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01385

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01385 Gene

Disorders for LINC01385 Gene

No disorders were found for LINC01385 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01385 Gene

Publications for LINC01385 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01385 Gene

Sources for LINC01385 Gene

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