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Aliases for LINC01384 Gene

Subcategory (RNA class) for LINC01384 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01384 Gene

  • Long Intergenic Non-Protein Coding RNA 1384 2 3 5

External Ids for LINC01384 Gene

Summaries for LINC01384 Gene

GeneCards Summary for LINC01384 Gene

LINC01384 (Long Intergenic Non-Protein Coding RNA 1384) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01384 include Thyroid Cancer, Nonmedullary, 1.

Additional gene information for LINC01384 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01384 Gene

Genomics for LINC01384 Gene

GeneHancer (GH) Regulatory Elements for LINC01384 Gene

Promoters and enhancers for LINC01384 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J022581 Promoter/Enhancer 1.7 EPDnew ENCODE dbSUPER 10 +23.8 23838 4.2 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 YY1 PAF1 ZNF263 SP3 FOXA2 ENSG00000283932 NXT1 LINC01384 LINC00261
GH20J022574 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 4.3 +29.8 29843 6.1 FOXA2 ARID4B FEZF1 DMAP1 ZNF48 YY1 GLIS2 RUNX3 NFKBIZ PAF1 LINC00261 FOXA2 LINC01384 ENSG00000283932 GC20P022525
GH20J022570 Enhancer 0.8 ENCODE dbSUPER 4.7 +35.4 35445 2.6 FOXA2 ZSCAN4 ZNF148 POLR2A SMARCA4 IKZF1 ZNF341 CTBP2 PRPF4 MLLT1 LINC01384 LINC00261 ENSG00000283932 GC20P022525
GH20J022662 Enhancer 0.4 ENCODE 8 -56.0 -56041 2.1 NANOG ZIC2 FOXA2 LINC01384 ENSG00000283072
GH20J022586 Enhancer 1.3 FANTOM5 ENCODE dbSUPER 0.3 +20.6 20578 0.3 ARID4B SIN3A DMAP1 ZNF48 SLC30A9 GLIS2 ARID2 ZNF143 RXRA NFYC FOXA2 LINC01384
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01384 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01384 Gene

Genomic Locations for LINC01384 Gene
chr20:22,587,522-22,607,517
(GRCh38/hg38)
Size:
19,996 bases
Orientation:
Minus strand
chr20:22,568,160-22,588,155
(GRCh37/hg19)
Size:
19,996 bases
Orientation:
Minus strand

Genomic View for LINC01384 Gene

Genes around LINC01384 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01384 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01384 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01384 Gene

Proteins for LINC01384 Gene

Post-translational modifications for LINC01384 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01384 Gene

Domains & Families for LINC01384 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01384 Gene

Function for LINC01384 Gene

Phenotypes From GWAS Catalog for LINC01384 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01384 Gene

Localization for LINC01384 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01384 Gene

Pathways & Interactions for LINC01384 Gene

SuperPathways for LINC01384 Gene

No Data Available

Interacting Proteins for LINC01384 Gene

Gene Ontology (GO) - Biological Process for LINC01384 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01384 Gene

Drugs & Compounds for LINC01384 Gene

No Compound Related Data Available

Transcripts for LINC01384 Gene

mRNA/cDNA for LINC01384 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01384 Gene

No ASD Table

Relevant External Links for LINC01384 Gene

GeneLoc Exon Structure for
LINC01384
ECgene alternative splicing isoforms for
LINC01384

Expression for LINC01384 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01384 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01384 Gene:

LINC01384
genes like me logo Genes that share expression patterns with LINC01384: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01384 Gene

Orthologs for LINC01384 Gene

Evolution for LINC01384 Gene

ENSEMBL:
Gene Tree for LINC01384 (if available)
TreeFam:
Gene Tree for LINC01384 (if available)

No data available for Orthologs for LINC01384 Gene

Paralogs for LINC01384 Gene

No data available for Paralogs for LINC01384 Gene

Variants for LINC01384 Gene

Sequence variations from dbSNP and Humsavar for LINC01384 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000058114 -- 22,607,059(-) A/C intron_variant
rs1000154963 -- 22,606,134(-) CTCTCT/CTCT intron_variant
rs1000327340 -- 22,596,312(-) A/G intron_variant
rs1000476982 -- 22,590,007(-) T/C intron_variant
rs1000560834 -- 22,604,423(-) C/T intron_variant

Additional Variant Information for LINC01384 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01384

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01384 Gene

Disorders for LINC01384 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01384 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
thyroid cancer, nonmedullary, 1
  • nmtc1
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01384

genes like me logo Genes that share disorders with LINC01384: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01384 Gene

Publications for LINC01384 Gene

  1. Genome-wide association meta-analysis identifies novel variants associated with fasting plasma glucose in East Asians. (PMID: 25187374) Hwang JY … Kim BJ (Diabetes 2015) 3 58
  2. A weighted false discovery rate control procedure reveals alleles at FOXA2 that influence fasting glucose levels. (PMID: 20152958) Xing C … Boerwinkle E (American journal of human genetics 2010) 3 58
  3. LncRNA-NEF antagonized epithelial to mesenchymal transition and cancer metastasis via cis-regulating FOXA2 and inactivating Wnt/β-catenin signaling. (PMID: 29311643) Liang WC … Zhang JF (Oncogene 2018) 3

Products for LINC01384 Gene

Sources for LINC01384 Gene

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