Aliases for LINC01381 Gene

Subcategory (RNA class) for LINC01381 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01381 Gene

  • Long Intergenic Non-Protein Coding RNA 1381 2 3 5
  • DNMT3A Antisense Downstream Transcript 2 3
  • LINC01381 2 170
  • TCONS_00002860 3
  • NONHSAG027251 94
  • HSALNG0013640 169
  • DADOT 3

External Ids for LINC01381 Gene

Summaries for LINC01381 Gene

GeneCards Summary for LINC01381 Gene

LINC01381 (Long Intergenic Non-Protein Coding RNA 1381) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01381 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01381 Gene

Genomics for LINC01381 Gene

GeneHancer (GH) Regulatory Elements for LINC01381 Gene

Promoters and enhancers for LINC01381 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J025204 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 750.6 +0.1 114 1 POLR2A BACH1 PKNOX1 DPF2 IKZF1 SIN3A LINC01381 lnc-EFR3B-5
GH02J024970 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 11.1 -232.1 -232136 3.7 SIN3A ZBTB40 SP1 ZBTB6 LCORL MLX SMARCE1 RBPJ POLR2A NR2F1 DNAJC27-AS1 DNAJC27 lnc-ADCY3-3 ADCY3 WDCP ASXL2 EFR3B DNMT3A FKBP1B DTNB
GH02J025284 Enhancer 1.1 FANTOM5 ENCODE dbSUPER 11 +81.8 81773 2.3 NR2F1 NR2F6 MYC MAX POLR2A ZNF687 IKZF1 PKNOX1 DPF2 ELF1 DNMT3A MIR1301 LINC01381 DNAJC27 piR-43105-342
GH02J025587 Enhancer 1.1 Ensembl ENCODE dbSUPER 10.3 +382.2 382187 3.8 ZNF24 SP1 JUND ETV6 RELA BCL6B MLLT1 ZNF687 CREM ZBED1 DTNB LINC01381 ENSG00000224220 RF00017-3134 lnc-ASXL2-5 lnc-ASXL2-6
GH02J024975 Enhancer 1 Ensembl ENCODE 11.1 -228.6 -228624 0.6 CTCF RBPJ CC2D1A RAD21 ELF3 SP7 ZSCAN21 SP5 KAT8 ARID2 EFR3B LINC01381 POMC ADCY3 DNAJC27 DNAJC27-AS1 piR-50357-070
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01381 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01381 Gene

Genomic Locations for LINC01381 Gene
chr2:25,204,313-25,209,203
(GRCh38/hg38)
Size:
4,891 bases
Orientation:
Plus strand
chr2:25,427,182-25,432,071
(GRCh37/hg19)
Size:
4,890 bases
Orientation:
Plus strand

Genomic View for LINC01381 Gene

Genes around LINC01381 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01381 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01381 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01381 Gene

Proteins for LINC01381 Gene

Post-translational modifications for LINC01381 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01381 Gene

Domains & Families for LINC01381 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01381 Gene

Function for LINC01381 Gene

Phenotypes From GWAS Catalog for LINC01381 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01381 Gene

Localization for LINC01381 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01381 Gene

Pathways & Interactions for LINC01381 Gene

PathCards logo

SuperPathways for LINC01381 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01381 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01381 Gene

Drugs & Compounds for LINC01381 Gene

No Compound Related Data Available

Transcripts for LINC01381 Gene

mRNA/cDNA for LINC01381 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNACentral transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :
(1) LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01381 Gene

No ASD Table

Relevant External Links for LINC01381 Gene

GeneLoc Exon Structure for
LINC01381
ECgene alternative splicing isoforms for
LINC01381

Expression for LINC01381 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01381 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01381 Gene:

LINC01381
genes like me logo Genes that share expression patterns with LINC01381: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01381 Gene

Orthologs for LINC01381 Gene

Evolution for LINC01381 Gene

ENSEMBL:
Gene Tree for LINC01381 (if available)
TreeFam:
Gene Tree for LINC01381 (if available)

No data available for Orthologs for LINC01381 Gene

Paralogs for LINC01381 Gene

No data available for Paralogs for LINC01381 Gene

Variants for LINC01381 Gene

Sequence variations from dbSNP and Humsavar for LINC01381 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000334147 -- 25,206,687(+) G/A intron_variant
rs1000429079 -- 25,206,395(+) G/A intron_variant
rs1000666551 -- 25,207,879(+) G/A intron_variant
rs1000771868 -- 25,209,512(+) G/T downstream_transcript_variant
rs1000782301 -- 25,207,549(+) G/T intron_variant

Additional Variant Information for LINC01381 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01381

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01381 Gene

Disorders for LINC01381 Gene

Additional Disease Information for LINC01381

No disorders were found for LINC01381 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01381 Gene

Publications for LINC01381 Gene

No publications were found for LINC01381 Gene.

No data available for External Links for LINC01381 Gene

Products for LINC01381 Gene

Sources for LINC01381 Gene