Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01381 Gene

Subcategory (RNA class) for LINC01381 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01381 Gene

  • Long Intergenic Non-Protein Coding RNA 1381 2 3 5
  • DNMT3A Antisense Downstream Transcript 2 3
  • TCONS_00002860 3
  • DADOT 3

External Ids for LINC01381 Gene

Summaries for LINC01381 Gene

GeneCards Summary for LINC01381 Gene

LINC01381 (Long Intergenic Non-Protein Coding RNA 1381) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01381 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01381 Gene

Genomics for LINC01381 Gene

GeneHancer (GH) Regulatory Elements for LINC01381 Gene

Promoters and enhancers for LINC01381 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J025204 Promoter/Enhancer 1.1 Ensembl ENCODE 650.7 +0.2 248 0.7 PKNOX1 POLR2A IKZF1 BACH1 SIN3A EBF1 MEF2B DPF2 LINC01381 GC02P025214 GC02M025128
GH02J024970 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 11.1 -232.1 -232078 3.6 CLOCK ZFP64 DMAP1 YY1 ZNF213 SP3 NFYC GLIS1 RCOR2 NBN DNAJC27 DNAJC27-AS1 ADCY3 WDCP ASXL2 ENSG00000271936 EFR3B LINC01381 POMC PTRHD1
GH02J025284 Enhancer 1.4 FANTOM5 Ensembl ENCODE dbSUPER 11 +81.8 81773 2.3 HDGF PKNOX1 USF1 MAX EBF1 BATF IRF4 ZNF48 ETS1 POLR2A DNMT3A MIR1301 LINC01381 DNAJC27 GC02M025128
GH02J025557 Enhancer 1.3 FANTOM5 Ensembl ENCODE 10.5 +354.0 353988 2.2 PKNOX1 STAT5A FEZF1 BATF IRF4 ATF7 ETV6 BCLAF1 IKZF2 RUNX3 LINC01381 RAB10 GC02P025491 GC02P025633 DTNB
GH02J025077 Enhancer 1.3 Ensembl ENCODE dbSUPER 9.9 -125.8 -125755 1.3 SIN3A FEZF1 ZNF2 GTF3C2 GLIS2 FOS SP3 REST TSHZ1 SREBF1 ADCY3 ITSN2 ASXL2 POMC LINC01381 SUCLA2P3 RN7SL856P EFR3B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01381 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01381 Gene

Genomic Locations for LINC01381 Gene
chr2:25,204,313-25,209,202
(GRCh38/hg38)
Size:
4,890 bases
Orientation:
Plus strand
chr2:25,427,182-25,432,071
(GRCh37/hg19)
Size:
4,890 bases
Orientation:
Plus strand

Genomic View for LINC01381 Gene

Genes around LINC01381 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01381 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01381 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01381 Gene

Proteins for LINC01381 Gene

Post-translational modifications for LINC01381 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01381 Gene

Domains & Families for LINC01381 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01381 Gene

Function for LINC01381 Gene

Phenotypes From GWAS Catalog for LINC01381 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01381 Gene

Localization for LINC01381 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01381 Gene

Pathways & Interactions for LINC01381 Gene

SuperPathways for LINC01381 Gene

No Data Available

Interacting Proteins for LINC01381 Gene

Gene Ontology (GO) - Biological Process for LINC01381 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01381 Gene

Drugs & Compounds for LINC01381 Gene

No Compound Related Data Available

Transcripts for LINC01381 Gene

mRNA/cDNA for LINC01381 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01381 Gene

No ASD Table

Relevant External Links for LINC01381 Gene

GeneLoc Exon Structure for
LINC01381
ECgene alternative splicing isoforms for
LINC01381

Expression for LINC01381 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01381 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01381 Gene:

LINC01381
genes like me logo Genes that share expression patterns with LINC01381: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01381 Gene

Orthologs for LINC01381 Gene

Evolution for LINC01381 Gene

ENSEMBL:
Gene Tree for LINC01381 (if available)
TreeFam:
Gene Tree for LINC01381 (if available)

No data available for Orthologs for LINC01381 Gene

Paralogs for LINC01381 Gene

No data available for Paralogs for LINC01381 Gene

Variants for LINC01381 Gene

Sequence variations from dbSNP and Humsavar for LINC01381 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000334147 -- 25,206,687(+) G/A intron_variant
rs1000429079 -- 25,206,395(+) G/A intron_variant
rs1000666551 -- 25,207,879(+) G/A intron_variant
rs1000771868 -- 25,209,512(+) G/T downstream_transcript_variant
rs1000782301 -- 25,207,549(+) G/T intron_variant

Additional Variant Information for LINC01381 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01381

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01381 Gene

Disorders for LINC01381 Gene

Additional Disease Information for LINC01381

No disorders were found for LINC01381 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01381 Gene

Publications for LINC01381 Gene

No publications were found for LINC01381 Gene.

Products for LINC01381 Gene

Sources for LINC01381 Gene

Content
Loading form....