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Aliases for LINC01378 Gene

Subcategory (RNA class) for LINC01378 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01378 Gene

  • Long Intergenic Non-Protein Coding RNA 1378 2 3 5

External Ids for LINC01378 Gene

Previous GeneCards Identifiers for LINC01378 Gene

  • GC04P117428

Summaries for LINC01378 Gene

GeneCards Summary for LINC01378 Gene

LINC01378 (Long Intergenic Non-Protein Coding RNA 1378) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01378 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01378 Gene

Genomics for LINC01378 Gene

GeneHancer (GH) Regulatory Elements for LINC01378 Gene

Promoters and enhancers for LINC01378 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J117399 Enhancer 0.8 Ensembl ENCODE 0.4 -5.9 -5850 1.3 SOX13 PKNOX1 FOXA2 TEAD1 JUN HMG20A ZNF384 JUND POLR2A PRDM1 LINC01378 LINC02262
GH04J117575 Promoter 0.5 Ensembl 0.1 +169.8 169835 0.4 NT5C3AP1 PIR61290 LINC01378
GH04J117466 Enhancer 0.2 ENCODE 0.2 +60.5 60519 1.2 RPSAP35 LINC01378 PIR61290
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01378 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01378 Gene

Genomic Locations for LINC01378 Gene
chr4:117,406,166-117,691,188
(GRCh38/hg38)
Size:
285,023 bases
Orientation:
Plus strand
chr4:118,349,552-118,612,343
(GRCh37/hg19)
Size:
262,792 bases
Orientation:
Plus strand

Genomic View for LINC01378 Gene

Genes around LINC01378 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01378 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01378 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01378 Gene

Proteins for LINC01378 Gene

Post-translational modifications for LINC01378 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01378 Gene

Domains & Families for LINC01378 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01378 Gene

Function for LINC01378 Gene

Phenotypes From GWAS Catalog for LINC01378 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01378 Gene

Localization for LINC01378 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01378 Gene

Pathways & Interactions for LINC01378 Gene

SuperPathways for LINC01378 Gene

No Data Available

Interacting Proteins for LINC01378 Gene

Gene Ontology (GO) - Biological Process for LINC01378 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01378 Gene

Drugs & Compounds for LINC01378 Gene

No Compound Related Data Available

Transcripts for LINC01378 Gene

mRNA/cDNA for LINC01378 Gene

(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01378 Gene

No ASD Table

Relevant External Links for LINC01378 Gene

GeneLoc Exon Structure for
LINC01378
ECgene alternative splicing isoforms for
LINC01378

Expression for LINC01378 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01378 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01378 Gene:

LINC01378
genes like me logo Genes that share expression patterns with LINC01378: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01378 Gene

Orthologs for LINC01378 Gene

Evolution for LINC01378 Gene

ENSEMBL:
Gene Tree for LINC01378 (if available)
TreeFam:
Gene Tree for LINC01378 (if available)

No data available for Orthologs for LINC01378 Gene

Paralogs for LINC01378 Gene

No data available for Paralogs for LINC01378 Gene

Variants for LINC01378 Gene

Sequence variations from dbSNP and Humsavar for LINC01378 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000002568 -- 117,474,608(+) T/G intron_variant
rs1000003192 -- 117,583,729(+) A/G intron_variant
rs1000011929 -- 117,470,127(+) T/G intron_variant
rs1000012837 -- 117,671,317(+) C/A intron_variant
rs1000070598 -- 117,632,024(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01378 Gene

Variant ID Type Subtype PubMed ID
nsv966313 CNV duplication 23825009
nsv954424 CNV deletion 24416366
nsv595282 CNV loss 21841781
nsv478631 CNV novel sequence insertion 20440878
nsv461630 CNV loss 19166990
nsv4484 CNV insertion 18451855
nsv436963 CNV loss 16327808
nsv292092 CNV deletion 16902084
nsv1147092 CNV deletion 26484159
nsv1123835 CNV deletion 24896259
nsv1117969 CNV deletion 24896259
nsv1074208 CNV deletion 25765185
esv4827 CNV loss 18987735
esv3601925 CNV gain 21293372
esv3601923 CNV loss 21293372
esv3601922 CNV loss 21293372
esv3564491 CNV deletion 23714750
esv34354 CNV gain 17911159
esv3397644 CNV insertion 20981092
esv3369098 CNV insertion 20981092
esv3355980 CNV insertion 20981092
esv3309680 CNV mobile element insertion 20981092
esv3056591 CNV deletion 24192839
esv2760886 CNV loss 21179565
esv2759279 CNV gain 17122850
esv275303 CNV gain+loss 21479260
esv2728212 CNV deletion 23290073
esv2728211 CNV deletion 23290073
esv2728210 CNV deletion 23290073
esv2674279 CNV deletion 23128226
esv2668983 CNV deletion 23128226
esv2663832 CNV deletion 23128226
esv2084082 CNV deletion 18987734
dgv334e215 CNV deletion 23714750

Additional Variant Information for LINC01378 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01378

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01378 Gene

Disorders for LINC01378 Gene

Additional Disease Information for LINC01378

No disorders were found for LINC01378 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01378 Gene

Publications for LINC01378 Gene

No publications were found for LINC01378 Gene.

Products for LINC01378 Gene

Sources for LINC01378 Gene

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