Aliases for LINC01377 Gene

Subcategory (RNA class) for LINC01377 Gene


Quality Score for this RNA gene is


Aliases for LINC01377 Gene

  • Long Intergenic Non-Protein Coding RNA 1377 2 3 5
  • CTD-2029E14.1 3
  • HSALNG0039710 169
  • NONHSAG039702 94
  • AC091832.1 5
  • Lnc-IRX1-5 170
  • LINC01377 2

External Ids for LINC01377 Gene

Summaries for LINC01377 Gene

GeneCards Summary for LINC01377 Gene

LINC01377 (Long Intergenic Non-Protein Coding RNA 1377) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01377 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01377 Gene

Genomics for LINC01377 Gene

GeneHancer (GH) Regulatory Elements for LINC01377 Gene

Promoters and enhancers for LINC01377 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J003186 Enhancer 1.1 VISTA UCNEbase Ensembl 5.4 +8.9 8893 2.2 RNF2 EZH2 TAL1 LINC01377 piR-32287-016
GH05J003194 Enhancer 0.3 Ensembl 5.1 +17.6 17587 2.4 TCF7L2 CTCF piR-32287-016 LINC01377 lnc-IRX1-6
GH05J003182 Enhancer 0.9 VISTA UCNEbase 0.6 +4.8 4817 1.1 PKNOX1 POLR2A FOS LINC01377 piR-32287-016
GH05J003179 Enhancer 0.5 VISTA UCNEbase 0.6 +2.1 2095 0.8 LINC01377 piR-32287-016
GH05J003188 Enhancer 0.4 FANTOM5 0.4 +10.5 10461 0.4 RNF2 EZH2 piR-32287-016 LINC01377
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01377 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01377 Gene

Genomic Locations for LINC01377 Gene
3,674 bases
Plus strand
3,138 bases
Plus strand

Genomic View for LINC01377 Gene

Genes around LINC01377 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01377 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01377 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01377 Gene

Proteins for LINC01377 Gene

Post-translational modifications for LINC01377 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01377 Gene

Domains & Families for LINC01377 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01377 Gene

Function for LINC01377 Gene

Phenotypes From GWAS Catalog for LINC01377 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01377 Gene

Localization for LINC01377 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01377 Gene

Pathways & Interactions for LINC01377 Gene

PathCards logo

SuperPathways for LINC01377 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01377 Gene


No data available for Pathways by source and SIGNOR curated interactions for LINC01377 Gene

Drugs & Compounds for LINC01377 Gene

No Compound Related Data Available

Transcripts for LINC01377 Gene

mRNA/cDNA for LINC01377 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNACentral transcripts :
(4) LNCipedia transcripts :
(2) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01377 Gene

No ASD Table

Relevant External Links for LINC01377 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for LINC01377 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01377 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01377 Gene:

genes like me logo Genes that share expression patterns with LINC01377: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01377 Gene

Orthologs for LINC01377 Gene

Evolution for LINC01377 Gene

Gene Tree for LINC01377 (if available)
Gene Tree for LINC01377 (if available)

No data available for Orthologs for LINC01377 Gene

Paralogs for LINC01377 Gene

No data available for Paralogs for LINC01377 Gene

Variants for LINC01377 Gene

Sequence variations from dbSNP and Humsavar for LINC01377 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000413800 -- 3,177,635(+) G/C upstream_transcript_variant
rs1001113468 -- 3,176,735(+) G/A upstream_transcript_variant
rs1001247765 -- 3,177,713(+) C/T upstream_transcript_variant
rs1002347231 -- 3,178,627(+) T/G intron_variant
rs1002568796 -- 3,176,063(+) G/A upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01377 Gene

Variant ID Type Subtype PubMed ID
nsv526522 CNV gain 19592680
nsv596919 CNV gain 21841781
nsv830188 CNV gain 17160897

Additional Variant Information for LINC01377 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01377 Gene

Disorders for LINC01377 Gene

Additional Disease Information for LINC01377

No disorders were found for LINC01377 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01377 Gene

Publications for LINC01377 Gene

No publications were found for LINC01377 Gene.

Products for LINC01377 Gene

Sources for LINC01377 Gene