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Aliases for LINC01376 Gene

Subcategory (RNA class) for LINC01376 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01376 Gene

  • Long Intergenic Non-Protein Coding RNA 1376 2 3 5

External Ids for LINC01376 Gene

Summaries for LINC01376 Gene

GeneCards Summary for LINC01376 Gene

LINC01376 (Long Intergenic Non-Protein Coding RNA 1376) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01376 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01376 Gene

Genomics for LINC01376 Gene

GeneHancer (GH) Regulatory Elements for LINC01376 Gene

Promoters and enhancers for LINC01376 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J020065 Enhancer 1.4 Ensembl ENCODE dbSUPER 31.4 -719.2 -719237 1.9 SMAD1 MLX ARID4B FEZF1 DMAP1 ZNF48 FOS SP5 ZNF662 ZNF491 TTC32 WDR35 LINC01376 PUM2 MATN3 ENSG00000234378 LOC105373463 GC02M020086
GH02J020166 Enhancer 1.3 Ensembl ENCODE dbSUPER 11.4 -819.9 -819884 2 HDGF ARNT ZNF493 ZNF133 YBX1 TCF12 ZNF548 FOS RUNX3 ZNF202 PUM2 TTC32 MATN3 WDR35 LINC00954 LINC01376 SDC1 LAPTM4A GC02M020159 GC02P020178
GH02J019129 Enhancer 0.8 Ensembl ENCODE 11.9 +215.9 215930 1.7 ZNF639 ZSCAN26 ZNF114 JUN ZIK1 ZBTB11 SALL2 GABPA ZNF148 JUND TTC32 LINC01376 ENSG00000260331 GC02P019090 GC02P019209
GH02J019137 Enhancer 1.4 FANTOM5 Ensembl ENCODE 0.1 +206.0 205983 6.3 PKNOX1 CLOCK FOXA2 MLX ZFP64 ARID4B NEUROD1 DMAP1 ETS1 TCF12 ENSG00000271991 OSR1 GC02P019090 GC02P019209 LINC01376
GH02J019255 Enhancer 0.5 ENCODE 0.2 +90.3 90312 1.4 ZFHX2 JUND ESRRA NFIB EGR2 ENSG00000271991 GC02M019253 GC02M019337 LINC01376
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01376 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01376 Gene

Genomic Locations for LINC01376 Gene
chr2:18,984,658-19,346,748
(GRCh38/hg38)
Size:
362,091 bases
Orientation:
Minus strand
chr2:19,167,729-19,546,509
(GRCh37/hg19)
Size:
378,781 bases
Orientation:
Minus strand

Genomic View for LINC01376 Gene

Genes around LINC01376 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01376 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01376 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01376 Gene

Proteins for LINC01376 Gene

Post-translational modifications for LINC01376 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01376 Gene

Domains & Families for LINC01376 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01376 Gene

Function for LINC01376 Gene

Phenotypes From GWAS Catalog for LINC01376 Gene

Phenotypes for LINC01376 Gene

genes like me logo Genes that share phenotypes with LINC01376: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01376 Gene

Localization for LINC01376 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01376 Gene

Pathways & Interactions for LINC01376 Gene

SuperPathways for LINC01376 Gene

No Data Available

Interacting Proteins for LINC01376 Gene

Gene Ontology (GO) - Biological Process for LINC01376 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01376 Gene

Drugs & Compounds for LINC01376 Gene

No Compound Related Data Available

Transcripts for LINC01376 Gene

mRNA/cDNA for LINC01376 Gene

(1) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01376 Gene

No ASD Table

Relevant External Links for LINC01376 Gene

GeneLoc Exon Structure for
LINC01376
ECgene alternative splicing isoforms for
LINC01376

Expression for LINC01376 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01376 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01376 Gene:

LINC01376
genes like me logo Genes that share expression patterns with LINC01376: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01376 Gene

Orthologs for LINC01376 Gene

Evolution for LINC01376 Gene

ENSEMBL:
Gene Tree for LINC01376 (if available)
TreeFam:
Gene Tree for LINC01376 (if available)

No data available for Orthologs for LINC01376 Gene

Paralogs for LINC01376 Gene

No data available for Paralogs for LINC01376 Gene

Variants for LINC01376 Gene

Sequence variations from dbSNP and Humsavar for LINC01376 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1000022839 -- 19,026,689(-) C/T non_coding_transcript_variant
rs1000036570 -- 19,020,493(-) G/C intron_variant
rs1000038950 -- 18,989,980(-) C/T intron_variant
rs1000041293 -- 18,993,299(-) A/G intron_variant
rs1000089634 -- 19,025,277(-) C/G intron_variant

Additional Variant Information for LINC01376 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01376

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01376 Gene

Disorders for LINC01376 Gene

Additional Disease Information for LINC01376

No disorders were found for LINC01376 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01376 Gene

Publications for LINC01376 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01376 Gene

Sources for LINC01376 Gene

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