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Aliases for LINC01375 Gene

Subcategory (RNA class) for LINC01375 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01375 Gene

  • Long Intergenic Non-Protein Coding RNA 1375 2 3 5

External Ids for LINC01375 Gene

Summaries for LINC01375 Gene

GeneCards Summary for LINC01375 Gene

LINC01375 (Long Intergenic Non-Protein Coding RNA 1375) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01375 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01375 Gene

Genomics for LINC01375 Gene

GeneHancer (GH) Regulatory Elements for LINC01375 Gene

Promoters and enhancers for LINC01375 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I089920 Enhancer 0.7 ENCODE 0.3 +35.8 35789 2 NCOA3 NFIB JUN BRCA1 RFX5 CTBP1 GATA3 FOS RCOR1 FOSL2 IFIT1 GC10M089924 LINC01375 PIR54261
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01375 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01375 Gene

Genomic Locations for LINC01375 Gene
chr10:89,915,489-89,957,373
(GRCh38/hg38)
Size:
41,885 bases
Orientation:
Minus strand
chr10:91,675,246-91,717,130
(GRCh37/hg19)

Genomic View for LINC01375 Gene

Genes around LINC01375 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01375 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01375 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01375 Gene

Proteins for LINC01375 Gene

Post-translational modifications for LINC01375 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01375 Gene

Domains & Families for LINC01375 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01375 Gene

Function for LINC01375 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01375 Gene

Localization for LINC01375 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01375 Gene

Pathways & Interactions for LINC01375 Gene

SuperPathways for LINC01375 Gene

No Data Available

Interacting Proteins for LINC01375 Gene

Gene Ontology (GO) - Biological Process for LINC01375 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01375 Gene

Drugs & Compounds for LINC01375 Gene

No Compound Related Data Available

Transcripts for LINC01375 Gene

mRNA/cDNA for LINC01375 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01375 Gene

No ASD Table

Relevant External Links for LINC01375 Gene

GeneLoc Exon Structure for
LINC01375
ECgene alternative splicing isoforms for
LINC01375

Expression for LINC01375 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01375 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01375 Gene:

LINC01375
genes like me logo Genes that share expression patterns with LINC01375: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01375 Gene

Orthologs for LINC01375 Gene

Evolution for LINC01375 Gene

ENSEMBL:
Gene Tree for LINC01375 (if available)
TreeFam:
Gene Tree for LINC01375 (if available)

No data available for Orthologs for LINC01375 Gene

Paralogs for LINC01375 Gene

No data available for Paralogs for LINC01375 Gene

Variants for LINC01375 Gene

Sequence variations from dbSNP and Humsavar for LINC01375 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000027227 -- 89,939,250(-) C/T intron_variant
rs1000055286 -- 89,958,467(-) A/G upstream_transcript_variant
rs1000070364 -- 89,933,330(-) G/T intron_variant
rs1000199440 -- 89,919,504(-) G/A intron_variant
rs1000277075 -- 89,951,169(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01375 Gene

Variant ID Type Subtype PubMed ID
esv3624166 CNV loss 21293372
esv3624167 CNV loss 21293372
nsv1036581 CNV gain 25217958
nsv1043571 CNV loss 25217958
nsv1048021 CNV loss 25217958
nsv467430 CNV gain 19166990
nsv528860 CNV loss 19592680
nsv551874 CNV loss 21841781
nsv551875 CNV gain 21841781
nsv551876 CNV loss 21841781
nsv7485 CNV insertion 18451855
nsv7486 CNV insertion 18451855

Additional Variant Information for LINC01375 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01375

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01375 Gene

Disorders for LINC01375 Gene

Additional Disease Information for LINC01375

No disorders were found for LINC01375 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01375 Gene

Publications for LINC01375 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01375 Gene

Sources for LINC01375 Gene

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