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Aliases for LINC01374 Gene

Subcategory (RNA class) for LINC01374 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01374 Gene

  • Long Intergenic Non-Protein Coding RNA 1374 2 3
  • TCONS_00018278 3

External Ids for LINC01374 Gene

Previous GeneCards Identifiers for LINC01374 Gene

  • GC00U936256
  • GC10P089869
  • GC10P089883
  • GC10P089898
  • GC10P089912
  • GC10P089927

Summaries for LINC01374 Gene

GeneCards Summary for LINC01374 Gene

LINC01374 (Long Intergenic Non-Protein Coding RNA 1374) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01374 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01374 Gene

Genomics for LINC01374 Gene

GeneHancer (GH) Regulatory Elements for LINC01374 Gene

Promoters and enhancers for LINC01374 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I090046 Enhancer 1 FANTOM5 ENCODE 0.4 -18.4 -18367 1.2 PKNOX1 BACH1 BMI1 BATF KLF5 IRF4 ZEB1 HIC1 NFATC1 ATF7 KIF20B LINC01374 GC10P089979
GH10I090086 Enhancer 0.9 Ensembl ENCODE 0.3 +21.4 21449 2 CTCF BATF IRF4 RAD21 RELA ATF7 ETV6 BCLAF1 MAFK IKZF2 LINC01374 GC10P090116
GH10I090050 Enhancer 0.5 ENCODE 0.4 -13.8 -13845 2.2 ZFHX2 BCL11A IKZF1 EBF1 IKZF2 RUNX3 LINC01374 GC10P089979
GH10I090077 Enhancer 0.2 FANTOM5 0.4 +12.2 12189 0 LINC01374 GC10P090116
GH10I090006 Enhancer 0.4 ENCODE 0.2 -58.1 -58144 1.7 CTCF ZNF623 GC10P089979 LINC01374
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01374 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01374 Gene

Genomic Locations for LINC01374 Gene
chr10:90,065,757-90,079,837
(GRCh38/hg38)
Size:
14,081 bases
Orientation:
Plus strand

Genomic View for LINC01374 Gene

Genes around LINC01374 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01374 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01374 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01374 Gene

Proteins for LINC01374 Gene

Post-translational modifications for LINC01374 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01374 Gene

Domains & Families for LINC01374 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01374 Gene

Function for LINC01374 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01374 Gene

Localization for LINC01374 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01374 Gene

Pathways & Interactions for LINC01374 Gene

SuperPathways for LINC01374 Gene

No Data Available

Interacting Proteins for LINC01374 Gene

Gene Ontology (GO) - Biological Process for LINC01374 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01374 Gene

Drugs & Compounds for LINC01374 Gene

No Compound Related Data Available

Transcripts for LINC01374 Gene

mRNA/cDNA for LINC01374 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01374 Gene

No ASD Table

Relevant External Links for LINC01374 Gene

GeneLoc Exon Structure for
LINC01374
ECgene alternative splicing isoforms for
LINC01374

Expression for LINC01374 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01374 Gene:

LINC01374
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01374 Gene

Orthologs for LINC01374 Gene

Evolution for LINC01374 Gene

ENSEMBL:
Gene Tree for LINC01374 (if available)
TreeFam:
Gene Tree for LINC01374 (if available)

No data available for Orthologs for LINC01374 Gene

Paralogs for LINC01374 Gene

No data available for Paralogs for LINC01374 Gene

Variants for LINC01374 Gene

Sequence variations from dbSNP and Humsavar for LINC01374 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000025446 -- 90,067,518(+) C/T intron_variant
rs1000027227 -- 89,939,250(+) C/T intron_variant
rs1000032709 -- 89,895,453(+) C/T intron_variant
rs1000048665 -- 90,060,372(+) C/G intron_variant
rs1000053087 -- 89,977,944(+) A/T intron_variant

Additional Variant Information for LINC01374 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01374

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01374 Gene

Disorders for LINC01374 Gene

No disorders were found for LINC01374 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for LINC01374 Gene

Publications for LINC01374 Gene

  1. LncRNAs expression signatures of hepatocellular carcinoma revealed by microarray. (PMID: 24876753) Liu WT … Huang JF (World journal of gastroenterology 2014) 2 3 58

Products for LINC01374 Gene

Sources for LINC01374 Gene

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