Aliases for LINC01374 Gene

Subcategory (RNA class) for LINC01374 Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for LINC01374 Gene

  • Long Intergenic Non-Protein Coding RNA 1374 2 3 5
  • LINC01374 2 5 165
  • TCONS_00018278 2 3
  • NONHSAG006495.2 91
  • HSALNG0079606 164

External Ids for LINC01374 Gene

Previous GeneCards Identifiers for LINC01374 Gene

  • GC00U936256
  • GC10P089869
  • GC10P090066
  • GC10P090001
  • GC10P090039
  • GC10P089883
  • GC10P089898
  • GC10P089912
  • GC10P089927

Summaries for LINC01374 Gene

GeneCards Summary for LINC01374 Gene

LINC01374 (Long Intergenic Non-Protein Coding RNA 1374) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01374 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01374 Gene

Genomics for LINC01374 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01374 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J089853 Promoter 0.5 EPDnew 600.7 +0.4 379 0.1 CTCF RARA LINC01374 lnc-KIF20B-6 piR-33605-060 KIF20B
GH10J089854 Enhancer 0.4 ENCODE 600.7 +0.6 593 0.1 CTCF RARA ZNF143 RAD21 LINC01374 lnc-KIF20B-6 piR-33605-060 KIF20B
GH10J089860 Enhancer 0.9 ENCODE 0.4 +8.1 8053 2.2 PRDM10 ZNF629 ZNF512 ZNF692 POLR2A PRDM1 ZSCAN4 PATZ1 IKZF2 ZNF561 KIF20B LINC00865 ENSG00000235100 ACTA2-AS1 LINC01374 lnc-KIF20B-6 piR-33605-060 HTR7
GH10J089867 Enhancer 0.7 Ensembl 0.4 +15.0 14984 1.4 PRDM10 ZNF629 ZNF692 ZIC2 ZNF600 ZBTB44 ZNF10 ZXDB TSHZ1 ZNF580 LINC01374 lnc-KIF20B-6 piR-33605-060 KIF20B HTR7
GH10J089920 Enhancer 0.9 Ensembl ENCODE 0.2 +68.7 68685 4.4 CREB1 BRCA1 CTBP1 CEBPB FOS CHD2 JUN RCOR1 GTF2F1 JUND IFIT1 HTR7 piR-33605-060 lnc-PANK1-7 LINC01375 LINC01374 KIF20B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01374 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01374 Gene

Genomic Locations for LINC01374 Gene
chr10:89,853,516-90,225,443
(GRCh38/hg38)
Size:
371,928 bases
Orientation:
Plus strand

Genomic View for LINC01374 Gene

Genes around LINC01374 on UCSC Golden Path with GeneCards custom track
LINC01374 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01374 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01374 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01374 Gene

Proteins for LINC01374 Gene

Post-translational modifications for LINC01374 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01374 Gene

Domains & Families for LINC01374 Gene

Gene Families for LINC01374 Gene

genes like me logo Genes that share domains with LINC01374: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01374 Gene

Function for LINC01374 Gene

Phenotypes From GWAS Catalog for LINC01374 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01374 Gene

Localization for LINC01374 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01374 Gene

Pathways & Interactions for LINC01374 Gene

PathCards logo

SuperPathways for LINC01374 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01374 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01374 Gene

Drugs & Compounds for LINC01374 Gene

No Compound Related Data Available

Transcripts for LINC01374 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01374 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000BC456D_9606 lncRNA 475 2

HGNC: 50631,

RefSeq: NR_149079,

URS0000811DD7_9606 lncRNA 415 2

Ensembl: ENST00000629067 (view in UCSC) ,

LNCipedia: LINC01374:16,

URS0000EF2B64_9606 lncRNA 1100 1

Ensembl: ENST00000664430 (view in UCSC) ,

URS0000BC4467_9606 lncRNA 423 1

RefSeq: NR_149080,

URS00008BA79A_9606 lncRNA 613 3

LncBook: HSALNT0166155,

LNCipedia: LINC01374:25,

NONCODE: NONHSAT015578.2,

LINC01374 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01374 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01374 Gene

No ASD Table

Relevant External Links for LINC01374 Gene

GeneLoc Exon Structure for
LINC01374

Expression for LINC01374 Gene

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01374 Gene

Orthologs for LINC01374 Gene

Evolution for LINC01374 Gene

ENSEMBL:
Gene Tree for LINC01374 (if available)
TreeFam:
Gene Tree for LINC01374 (if available)

No data available for Orthologs for LINC01374 Gene

Paralogs for LINC01374 Gene

No data available for Paralogs for LINC01374 Gene

Variants for LINC01374 Gene

Additional dbSNP identifiers (rs#s) for LINC01374 Gene

Additional Variant Information for LINC01374 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01374

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01374 Gene

Disorders for LINC01374 Gene

Additional Disease Information for LINC01374

No disorders were found for LINC01374 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01374 Gene

Publications for LINC01374 Gene

  1. LncRNAs expression signatures of hepatocellular carcinoma revealed by microarray. (PMID: 24876753) Liu WT … Huang JF (World journal of gastroenterology 2014) 2 3

Products for LINC01374 Gene

Sources for LINC01374 Gene