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Aliases for LINC01372 Gene

Subcategory (RNA class) for LINC01372 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01372 Gene

  • Long Intergenic Non-Protein Coding RNA 1372 2 3 5

External Ids for LINC01372 Gene

Summaries for LINC01372 Gene

GeneCards Summary for LINC01372 Gene

LINC01372 (Long Intergenic Non-Protein Coding RNA 1372) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01372 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01372 Gene

Genomics for LINC01372 Gene

GeneHancer (GH) Regulatory Elements for LINC01372 Gene

Promoters and enhancers for LINC01372 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J067333 Enhancer 0.6 dbSUPER 14.9 +3.2 3211 11.8 SMARCA5 BCOR ZMYM3 ZKSCAN1 ZNF184 HDAC2 ZFP36 NFE2 KDM1A SETDB1 STAG3L4 LINC01372 RABGEF1 PMS2P4 LOC105375337 ENSG00000273448
GH07J067042 Enhancer 1.1 Ensembl ENCODE dbSUPER 7.1 -292.8 -292821 1.7 HDAC1 MEIS2 PKNOX1 ZBTB6 CEBPG NFE2 SMARCE1 SOX6 NRF1 CEBPB LINC01372 TYW1 SBDS ENSG00000233383
GH07J067392 Enhancer 0.5 ENCODE 13.6 +57.0 57037 1.6 SREBF1 SMARCE1 ZNF217 SP1 CTBP1 POLR2A REST STAG3L4 LINC01372 GC07P067381 LOC105375340
GH07J067327 Enhancer 0.2 dbSUPER 14.4 -6.6 -6649 4 STAG3L4 LINC01372 ENSG00000273448 ENSG00000228019
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01372 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01372 Gene

Genomic Locations for LINC01372 Gene
chr7:67,335,976-67,340,024
(GRCh38/hg38)
Size:
4,049 bases
Orientation:
Plus strand
chr7:66,800,963-66,805,011
(GRCh37/hg19)
Size:
4,049 bases
Orientation:
Plus strand

Genomic View for LINC01372 Gene

Genes around LINC01372 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01372 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01372 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01372 Gene

Proteins for LINC01372 Gene

Post-translational modifications for LINC01372 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01372 Gene

Domains & Families for LINC01372 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01372 Gene

Function for LINC01372 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01372 Gene

Localization for LINC01372 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01372 Gene

Pathways & Interactions for LINC01372 Gene

SuperPathways for LINC01372 Gene

No Data Available

Interacting Proteins for LINC01372 Gene

Gene Ontology (GO) - Biological Process for LINC01372 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01372 Gene

Drugs & Compounds for LINC01372 Gene

No Compound Related Data Available

Transcripts for LINC01372 Gene

mRNA/cDNA for LINC01372 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01372 Gene

No ASD Table

Relevant External Links for LINC01372 Gene

GeneLoc Exon Structure for
LINC01372
ECgene alternative splicing isoforms for
LINC01372

Expression for LINC01372 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01372 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01372 Gene:

LINC01372
genes like me logo Genes that share expression patterns with LINC01372: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01372 Gene

Orthologs for LINC01372 Gene

Evolution for LINC01372 Gene

ENSEMBL:
Gene Tree for LINC01372 (if available)
TreeFam:
Gene Tree for LINC01372 (if available)

No data available for Orthologs for LINC01372 Gene

Paralogs for LINC01372 Gene

No data available for Paralogs for LINC01372 Gene

Variants for LINC01372 Gene

Sequence variations from dbSNP and Humsavar for LINC01372 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs1000037810 -- 67,335,669(+) A/G upstream_transcript_variant
rs1000410235 -- 67,335,970(+) C/T upstream_transcript_variant
rs1001173717 -- 67,336,071(+) G/A non_coding_transcript_variant
rs1001434897 -- 67,336,423(+) A/G intron_variant
rs1003516348 -- 67,337,688(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01372 Gene

Variant ID Type Subtype PubMed ID
dgv6447n100 CNV loss 25217958
esv2759535 CNV gain 17122850
esv3571905 CNV loss 25503493
esv3613545 CNV loss 21293372
esv3613547 CNV loss 21293372
esv3891136 CNV gain 25118596
nsv1146102 OTHER inversion 26484159
nsv5775 CNV insertion 18451855
nsv970520 CNV duplication 23825009

Additional Variant Information for LINC01372 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01372

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01372 Gene

Disorders for LINC01372 Gene

Additional Disease Information for LINC01372

No disorders were found for LINC01372 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01372 Gene

Publications for LINC01372 Gene

No publications were found for LINC01372 Gene.

Products for LINC01372 Gene

Sources for LINC01372 Gene

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