LINC01370 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1370

GC20P040004
GIFtS:
13
See more...

Aliases for LINC01370 Gene

Subcategory (RNA class) for LINC01370 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01370 Gene

  • Long Intergenic Non-Protein Coding RNA 1370 2 3 5
  • LINC01370 2 5 165
  • Human Islet Long Non Coding RNA 25 2 3
  • HI-LNC25 2 3
  • NONHSAG031776.2 91
  • HSALNG0130081 164
  • HILNC25 3

External Ids for LINC01370 Gene

Summaries for LINC01370 Gene

GeneCards Summary for LINC01370 Gene

LINC01370 (Long Intergenic Non-Protein Coding RNA 1370) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01370 include Diabetes Mellitus, Noninsulin-Dependent.

Additional gene information for LINC01370 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01370 Gene

Genomics for LINC01370 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01370 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH20J040004 Enhancer 0.5 Ensembl 600.7 +0.3 319 0.2 REST SP1 FOXA2 ATF3 YY1 RAD21 HNF4A RXRA TAF1 LINC01370 ENSG00000233415 MAFB
GH20J040002 Enhancer 0.3 Ensembl 600.7 -1.7 -1681 0.2 ZNF341 LINC01370 piR-39858-384 MAFB
GH20J039985 Enhancer 1 Ensembl ENCODE CraniofacialAtlas 0.4 -18.1 -18081 3 REST SP1 FOXA2 MAFF ATF3 YY1 MAFK ZBTB33 JUND NR2F2 piR-39858-384 LINC01370 MAFB
GH20J040010 Enhancer 0.3 Ensembl ENCODE 0.4 +6.6 6639 1.1 LINC01370 ENSG00000233415 MAFB
GH20J040001 Enhancer 0.2 Ensembl 0.7 -2.1 -2081 0.2 LINC01370 piR-39858-384 MAFB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01370 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01370 Gene

Genomic Locations for LINC01370 Gene
chr20:40,003,982-40,030,757
(GRCh38/hg38)
Size:
26,776 bases
Orientation:
Plus strand
chr20:38,633,103-38,637,171
(GRCh37/hg19)
Size:
4,069 bases
Orientation:
Plus strand

Genomic View for LINC01370 Gene

Genes around LINC01370 on UCSC Golden Path with GeneCards custom track
LINC01370 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01370 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01370 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01370 Gene

Proteins for LINC01370 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01370 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01370 Gene

Domains & Families for LINC01370 Gene

Gene Families for LINC01370 Gene

HGNC:
genes like me logo Genes that share domains with LINC01370: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01370 Gene

Function for LINC01370 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01370 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01370 Gene

Localization for LINC01370 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for LINC01370 gene
Compartment Confidence
mitochondrion 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01370 Gene

Pathways & Interactions for LINC01370 Gene

PathCards logo

SuperPathways for LINC01370 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01370 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01370 Gene

Drugs & Compounds for LINC01370 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01370 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01370 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075E146_9606 lncRNA 838 4

HGNC: 50608,

RefSeq: NR_109936,

LncBook: HSALNT0267186,

LNCipedia: LINC01370:5,

URS0000334E6F_9606 lncRNA 538 3

Ensembl: ENST00000432633 (view in UCSC) ,

LNCipedia: LINC01370:7,

NONCODE: NONHSAT079734.2,

URS000075E48C_9606 lncRNA 754 2

RefSeq: NR_109937,

LNCipedia: LINC01370:6,

URS0000EEEAE4_9606 lncRNA 2584 1

Ensembl: ENST00000669808 (view in UCSC) ,

URS0000EF5415_9606 lncRNA 2441 1

Ensembl: ENST00000664271 (view in UCSC) ,

LINC01370 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01370 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01370 Gene

No ASD Table

Relevant External Links for LINC01370 Gene

GeneLoc Exon Structure for
LINC01370

Expression for LINC01370 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01370 Gene

mRNA expression in normal human tissues for LINC01370 Gene
mRNA expression by GTEx for LINC01370 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01370

genes like me logo Genes that share expression patterns with LINC01370: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01370 Gene

Orthologs for LINC01370 Gene

Evolution for LINC01370 Gene

ENSEMBL:
Gene Tree for LINC01370 (if available)
TreeFam:
Gene Tree for LINC01370 (if available)

No data available for Orthologs for LINC01370 Gene

Paralogs for LINC01370 Gene

No data available for Paralogs for LINC01370 Gene

Variants for LINC01370 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01370 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01370 Gene

Variant ID Type Subtype PubMed ID
esv3645816 CNV loss 21293372
nsv1058684 CNV loss 25217958

Additional Variant Information for LINC01370 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01370

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01370 Gene

Disorders for LINC01370 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01370 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
diabetes mellitus, noninsulin-dependent
  • niddm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01370

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with LINC01370: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01370 Gene

Publications for LINC01370 Gene

  1. Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. (PMID: 23040067) Morán I … Ferrer J (Cell metabolism 2012) 2 3

ExternalLinks

View latest publications for LINC01370 gene in Mastermind

Products for LINC01370 Gene

Sources for LINC01370 Gene