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Aliases for LINC01370 Gene

Subcategory (RNA class) for LINC01370 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01370 Gene

  • Long Intergenic Non-Protein Coding RNA 1370 2 3 5
  • Human Islet Long Non Coding RNA 25 2 3
  • HI-LNC25 3
  • HILNC25 3

External Ids for LINC01370 Gene

Summaries for LINC01370 Gene

GeneCards Summary for LINC01370 Gene

LINC01370 (Long Intergenic Non-Protein Coding RNA 1370) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with LINC01370 include Diabetes Mellitus, Noninsulin-Dependent.

Additional gene information for LINC01370 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01370 Gene

Genomics for LINC01370 Gene

GeneHancer (GH) Regulatory Elements for LINC01370 Gene

Promoters and enhancers for LINC01370 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J039985 Enhancer 0.9 Ensembl ENCODE 0.4 -18.1 -18133 2.1 PKNOX1 FOXA2 TAF1 MAX RAD21 YY1 EGR1 HNF4G MAFK CHD2 LINC01370 GC20P039952
GH20J039960 Enhancer 0.3 ENCODE 0.3 -43.0 -42956 1.6 POLR2A GC20P039952 LINC01370
GH20J040010 Enhancer 0.2 ENCODE 0.4 +6.2 6160 1.1 LINC01370 ENSG00000233415
GH20J040009 Enhancer 0.2 ENCODE 0.4 +5.3 5253 0.2 LINC01370 ENSG00000233415
GH20J039954 Enhancer 0.2 ENCODE 0.2 -49.8 -49793 0.5 GC20P039952 LINC01370
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01370 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01370 Gene

Genomic Locations for LINC01370 Gene
chr20:40,004,461-40,008,529
(GRCh38/hg38)
Size:
4,069 bases
Orientation:
Plus strand
chr20:38,633,103-38,637,171
(GRCh37/hg19)
Size:
4,069 bases
Orientation:
Plus strand

Genomic View for LINC01370 Gene

Genes around LINC01370 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01370 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01370 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01370 Gene

Proteins for LINC01370 Gene

Post-translational modifications for LINC01370 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01370 Gene

Domains & Families for LINC01370 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01370 Gene

Function for LINC01370 Gene

Phenotypes From GWAS Catalog for LINC01370 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01370 Gene

Localization for LINC01370 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01370 Gene

Pathways & Interactions for LINC01370 Gene

SuperPathways for LINC01370 Gene

No Data Available

Interacting Proteins for LINC01370 Gene

Gene Ontology (GO) - Biological Process for LINC01370 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01370 Gene

Drugs & Compounds for LINC01370 Gene

No Compound Related Data Available

Transcripts for LINC01370 Gene

mRNA/cDNA for LINC01370 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01370 Gene

No ASD Table

Relevant External Links for LINC01370 Gene

GeneLoc Exon Structure for
LINC01370
ECgene alternative splicing isoforms for
LINC01370

Expression for LINC01370 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01370 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01370 Gene:

LINC01370
genes like me logo Genes that share expression patterns with LINC01370: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01370 Gene

Orthologs for LINC01370 Gene

Evolution for LINC01370 Gene

ENSEMBL:
Gene Tree for LINC01370 (if available)
TreeFam:
Gene Tree for LINC01370 (if available)

No data available for Orthologs for LINC01370 Gene

Paralogs for LINC01370 Gene

No data available for Paralogs for LINC01370 Gene

Variants for LINC01370 Gene

Sequence variations from dbSNP and Humsavar for LINC01370 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000034928 -- 40,005,338(+) C/T intron_variant
rs1000106609 -- 40,005,588(+) G/T intron_variant
rs1002334125 -- 40,005,269(+) A/G intron_variant
rs1002450957 -- 40,006,463(+) C/G intron_variant
rs1002586339 -- 40,003,325(+) A/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01370 Gene

Variant ID Type Subtype PubMed ID
nsv1058684 CNV loss 25217958
esv3645816 CNV loss 21293372

Additional Variant Information for LINC01370 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01370

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01370 Gene

Disorders for LINC01370 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01370 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
diabetes mellitus, noninsulin-dependent
  • niddm
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for LINC01370

genes like me logo Genes that share disorders with LINC01370: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01370 Gene

Publications for LINC01370 Gene

  1. Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. (PMID: 23040067) Morán I … Ferrer J (Cell metabolism 2012) 2 3 58

Products for LINC01370 Gene

Sources for LINC01370 Gene

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