Aliases for LINC01366 Gene

Subcategory (RNA class) for LINC01366 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01366 Gene

  • Long Intergenic Non-Protein Coding RNA 1366 2 3 5
  • LINC01366 2 168
  • HSALNG0046509 167
  • HSALNG0046515 167
  • NONHSAG042199 92
  • Lnc-C5orf58-5 168
  • CTB-114C7.3 3

External Ids for LINC01366 Gene

Previous GeneCards Identifiers for LINC01366 Gene

  • GC05P170331
  • GC05P170308

Summaries for LINC01366 Gene

GeneCards Summary for LINC01366 Gene

LINC01366 (Long Intergenic Non-Protein Coding RNA 1366) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01366 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01366 Gene

Genomics for LINC01366 Gene

GeneHancer (GH) Regulatory Elements for LINC01366 Gene

Promoters and enhancers for LINC01366 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J170265 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 -2.0 -1972 7.3 CTCF TEAD4 ZBTB11 ZNF623 GABPA RFX1 REST RCOR1 CTBP1 RAD21 LINC01366 lnc-C5orf58-5 LCP2 KCNMB1 lnc-KCNMB1-4
GH05J170329 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 15 +61.6 61570 5.6 ZBTB40 SIN3A USF1 SP1 GTF2E2 ZIC2 ZBTB11 AFF1 TRIM28 RELA lnc-KCNIP1-6 lnc-LCP2-7 LINC01366 LCP2 KCNIP1-OT1 KCNMB1 C5orf58 lnc-KCNIP1-5
GH05J170327 Enhancer 0.6 FANTOM5 dbSUPER 5.4 +57.0 57040 0.3 SPI1 REST LCP2 KCNMB1 KCNIP1-OT1 LINC01366 lnc-KCNIP1-6 lnc-LCP2-7 ENSG00000250274
GH05J170372 Enhancer 0.2 Ensembl 5.1 +102.4 102358 1 LCP2 C5orf58 LINC01366 KCNIP1 KCNIP1-OT1
GH05J170273 Promoter/Enhancer 2.2 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +15.2 15211 26 HNRNPK CTCF SIN3A USF1 SP1 GTF2E2 TEAD4 ZIC2 REST RUNX1 LCP2 KCNMB1 SLIT3 KCNIP1-OT1 C5orf58 LINC01366 lnc-C5orf58-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01366 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01366 Gene

Genomic Locations for LINC01366 Gene
chr5:170,270,943-170,336,855
(GRCh38/hg38)
Size:
65,913 bases
Orientation:
Plus strand
chr5:169,758,433-169,762,104
(GRCh37/hg19)
Size:
3,672 bases
Orientation:
Plus strand

Genomic View for LINC01366 Gene

Genes around LINC01366 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01366 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01366 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01366 Gene

Proteins for LINC01366 Gene

Post-translational modifications for LINC01366 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01366 Gene

Domains & Families for LINC01366 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01366 Gene

Function for LINC01366 Gene

Phenotypes From GWAS Catalog for LINC01366 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01366 Gene

Localization for LINC01366 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01366 Gene

Pathways & Interactions for LINC01366 Gene

PathCards logo

SuperPathways for LINC01366 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01366 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01366 Gene

Drugs & Compounds for LINC01366 Gene

No Compound Related Data Available

Transcripts for LINC01366 Gene

mRNA/cDNA for LINC01366 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01366 Gene

No ASD Table

Relevant External Links for LINC01366 Gene

GeneLoc Exon Structure for
LINC01366

Expression for LINC01366 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01366 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01366

genes like me logo Genes that share expression patterns with LINC01366: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01366 Gene

Orthologs for LINC01366 Gene

Evolution for LINC01366 Gene

ENSEMBL:
Gene Tree for LINC01366 (if available)
TreeFam:
Gene Tree for LINC01366 (if available)

No data available for Orthologs for LINC01366 Gene

Paralogs for LINC01366 Gene

No data available for Paralogs for LINC01366 Gene

Variants for LINC01366 Gene

Additional dbSNP identifiers (rs#s) for LINC01366 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01366 Gene

Variant ID Type Subtype PubMed ID
nsv462515 CNV loss 19166990
nsv471054 CNV loss 18288195
nsv600260 CNV loss 21841781

Additional Variant Information for LINC01366 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01366 Gene

Disorders for LINC01366 Gene

Additional Disease Information for LINC01366

No disorders were found for LINC01366 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01366 Gene

Publications for LINC01366 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for LINC01366 Gene

Sources for LINC01366 Gene