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Aliases for LINC01366 Gene

Subcategory (RNA class) for LINC01366 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01366 Gene

  • Long Intergenic Non-Protein Coding RNA 1366 2 3 5
  • CTB-114C7.3 3

External Ids for LINC01366 Gene

Summaries for LINC01366 Gene

GeneCards Summary for LINC01366 Gene

LINC01366 (Long Intergenic Non-Protein Coding RNA 1366) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01366 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01366 Gene

Genomics for LINC01366 Gene

GeneHancer (GH) Regulatory Elements for LINC01366 Gene

Promoters and enhancers for LINC01366 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J170329 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 15.9 +2.4 2383 8.1 HDGF PKNOX1 SMAD1 ARNT YBX1 FEZF1 IRF4 E2F8 FOS MCM3 LCP2 KCNMB1 LINC01366 GABRP CTD-2270F17.1 C5orf58 KCNIP1
GH05J170327 Enhancer 0.6 FANTOM5 dbSUPER 5.9 -3.4 -3410 0.3 REST LCP2 KCNMB1 CTD-2270F17.1 LINC01366 ENSG00000250274
GH05J170311 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -17.9 -17896 4.2 CTCF HDAC1 ATF1 PKNOX1 USF1 MAX ZMYM3 EBF1 EED NFYB ENSG00000250274 LCP2 KCNMB1 KCNIP1 CTD-2270F17.1 LINC01366
GH05J170338 Enhancer 0.8 ENCODE 0.4 +7.4 7449 0.6 RB1 STAT5A KLF5 IRF4 RAD21 ARID2 ZNF143 BCLAF1 RUNX3 SMARCA5 KCNMB1 CTD-2270F17.1 C5orf58 LINC01366 KCNIP1
GH05J170325 Enhancer 0.2 FANTOM5 0.4 -5.5 -5490 0.2 LCP2 KCNMB1 CTD-2270F17.1 LINC01366 ENSG00000250274
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01366 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01366 Gene

Genomic Locations for LINC01366 Gene
chr5:170,331,393-170,335,100
(GRCh38/hg38)
Size:
3,708 bases
Orientation:
Plus strand
chr5:169,758,433-169,762,104
(GRCh37/hg19)
Size:
3,672 bases
Orientation:
Plus strand

Genomic View for LINC01366 Gene

Genes around LINC01366 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01366 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01366 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01366 Gene

Proteins for LINC01366 Gene

Post-translational modifications for LINC01366 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01366 Gene

Domains & Families for LINC01366 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01366 Gene

Function for LINC01366 Gene

Phenotypes From GWAS Catalog for LINC01366 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01366 Gene

Localization for LINC01366 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01366 Gene

Pathways & Interactions for LINC01366 Gene

SuperPathways for LINC01366 Gene

No Data Available

Interacting Proteins for LINC01366 Gene

Gene Ontology (GO) - Biological Process for LINC01366 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01366 Gene

Drugs & Compounds for LINC01366 Gene

No Compound Related Data Available

Transcripts for LINC01366 Gene

mRNA/cDNA for LINC01366 Gene

(1) REFSEQ mRNAs :
(9) Selected AceView cDNA sequences:
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(6) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01366 Gene

No ASD Table

Relevant External Links for LINC01366 Gene

GeneLoc Exon Structure for
LINC01366
ECgene alternative splicing isoforms for
LINC01366

Expression for LINC01366 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01366 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01366 Gene:

LINC01366
genes like me logo Genes that share expression patterns with LINC01366: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01366 Gene

Orthologs for LINC01366 Gene

Evolution for LINC01366 Gene

ENSEMBL:
Gene Tree for LINC01366 (if available)
TreeFam:
Gene Tree for LINC01366 (if available)

No data available for Orthologs for LINC01366 Gene

Paralogs for LINC01366 Gene

No data available for Paralogs for LINC01366 Gene

Variants for LINC01366 Gene

Sequence variations from dbSNP and Humsavar for LINC01366 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000123584 -- 170,329,415(+) G/C upstream_transcript_variant
rs1000453312 -- 170,333,992(+) C/T non_coding_transcript_variant
rs1000569274 -- 170,332,467(+) T/G intron_variant
rs1002505991 -- 170,331,140(+) G/A upstream_transcript_variant
rs1003046768 -- 170,331,463(+) T/C non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01366 Gene

Variant ID Type Subtype PubMed ID
nsv600260 CNV loss 21841781
nsv471054 CNV loss 18288195
nsv462515 CNV loss 19166990

Additional Variant Information for LINC01366 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01366

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01366 Gene

Disorders for LINC01366 Gene

Additional Disease Information for LINC01366

No disorders were found for LINC01366 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01366 Gene

Publications for LINC01366 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01366 Gene

Sources for LINC01366 Gene

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