Aliases for LINC01364 Gene

Subcategory (RNA class) for LINC01364 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01364 Gene

  • Long Intergenic Non-Protein Coding RNA 1364 2 3 5
  • LINC01364 2 5 165
  • NONHSAG001996.2 91
  • HSALNG0004963 164

External Ids for LINC01364 Gene

Summaries for LINC01364 Gene

GeneCards Summary for LINC01364 Gene

LINC01364 (Long Intergenic Non-Protein Coding RNA 1364) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01364 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01364 Gene

Genomics for LINC01364 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01364 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J087369 Enhancer 0.5 Ensembl 600.7 +1.2 1198 2.2 SCRT2 RCOR1 CHD2 GATA2 POLR2A LINC01364 piR-38352-017 LMO4
GH01J087371 Promoter 0.3 EPDnew 600.7 +0.0 7 0.1 LINC01364 piR-38352-017 LMO4
GH01J087355 Enhancer 0.7 VISTA UCNEbase 0.4 +15.0 15030 1.5 HSALNG0004962 piR-38352-017 LINC01364 LMO4
GH01J087367 Enhancer 0.3 Ensembl 0.7 +4.0 3998 0.6 SP7 LINC01364 piR-38352-017 LMO4
GH01J087363 Enhancer 0.3 Ensembl 0.4 +8.0 7998 0.2 ZMYM3 piR-38352-017 LINC01364 HSALNG0004962 LMO4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01364 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01364 Gene

Genomic Locations for LINC01364 Gene
chr1:87,352,849-87,371,699
(GRCh38/hg38)
Size:
18,851 bases
Orientation:
Minus strand
chr1:87,819,207-87,837,338
(GRCh37/hg19)
Size:
18,132 bases
Orientation:
Minus strand

Genomic View for LINC01364 Gene

Genes around LINC01364 on UCSC Golden Path with GeneCards custom track
LINC01364 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01364 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01364 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01364 Gene

Proteins for LINC01364 Gene

Post-translational modifications for LINC01364 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01364 Gene

Domains & Families for LINC01364 Gene

Gene Families for LINC01364 Gene

genes like me logo Genes that share domains with LINC01364: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01364 Gene

Function for LINC01364 Gene

Phenotypes From GWAS Catalog for LINC01364 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01364 Gene

Localization for LINC01364 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01364 Gene

Pathways & Interactions for LINC01364 Gene

PathCards logo

SuperPathways for LINC01364 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01364 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01364 Gene

Drugs & Compounds for LINC01364 Gene

No Compound Related Data Available

Transcripts for LINC01364 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01364 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075B9B0_9606 lncRNA 886 2

HGNC: 50599,

RefSeq: NR_038324,

URS0000EEEEA1_9606 lncRNA 920 1

Ensembl: ENST00000452509 (view in UCSC) ,

URS00008B94D1_9606 lncRNA 1596 3

LncBook: HSALNT0010039,

LNCipedia: LINC01364:4,

NONCODE: NONHSAT004299.2,

URS00008B34BB_9606 lncRNA 924 3

LncBook: HSALNT0010041,

LNCipedia: LINC01364:2,

NONCODE: NONHSAT004300.2,

URS00008B33E0_9606 lncRNA 780 3

LncBook: HSALNT0010043,

LNCipedia: LINC01364:1,

NONCODE: NONHSAT004301.2,

LINC01364 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01364 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01364 Gene

No ASD Table

Relevant External Links for LINC01364 Gene

GeneLoc Exon Structure for
LINC01364

Expression for LINC01364 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01364 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01364

genes like me logo Genes that share expression patterns with LINC01364: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01364 Gene

Orthologs for LINC01364 Gene

Evolution for LINC01364 Gene

ENSEMBL:
Gene Tree for LINC01364 (if available)
TreeFam:
Gene Tree for LINC01364 (if available)

No data available for Orthologs for LINC01364 Gene

Paralogs for LINC01364 Gene

No data available for Paralogs for LINC01364 Gene

Variants for LINC01364 Gene

Additional dbSNP identifiers (rs#s) for LINC01364 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01364 Gene

Variant ID Type Subtype PubMed ID
esv3893790 CNV loss 25118596

Additional Variant Information for LINC01364 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01364

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01364 Gene

Disorders for LINC01364 Gene

No disorders were found for LINC01364 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01364 Gene

Publications for LINC01364 Gene

No publications were found for LINC01364 Gene.

No data available for Mastermind for LINC01364 Gene

Products for LINC01364 Gene

Sources for LINC01364 Gene