Aliases for LINC01363 Gene

Subcategory (RNA class) for LINC01363 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01363 Gene

  • Long Intergenic Non-Protein Coding RNA 1363 2 3 5
  • LINC01363 2 168
  • NONHSAG003368 92
  • HSALNG0008215 167
  • RBSG4 3

External Ids for LINC01363 Gene

Summaries for LINC01363 Gene

GeneCards Summary for LINC01363 Gene

LINC01363 (Long Intergenic Non-Protein Coding RNA 1363) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01363 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01363 Gene

Genomics for LINC01363 Gene

GeneHancer (GH) Regulatory Elements for LINC01363 Gene

Promoters and enhancers for LINC01363 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J167195 Enhancer 0.5 Ensembl 500.7 -0.8 -796 2 ATF2 OSR2 WT1 FOS ZNF664 GATA2 ZFP3 ZNF629 ZNF692 LINC01363 ENSG00000272205
GH01J167165 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 11.9 +29.3 29312 2.3 ZSCAN5C TEAD4 ZNF423 TRIM28 RFX1 KLF7 ZNF341 POLR2A OSR2 WT1 GPA33 HSALNG0008213 LOC105371601 LINC01363 DUSP27
GH01J167134 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 +58.5 58508 4.6 EP300 SMC3 FOS NR3C1 NFE2 SMARCA4 TRIM28 MAX SETDB1 DACH1 GPA33 DUSP27 LINC01363 ENSG00000213068
GH01J167327 Promoter/Enhancer 1.8 VISTA EPDnew Ensembl ENCODE 5.3 -134.7 -134668 5.5 SIN3A EP300 AFF1 TRIM28 RCOR1 POLR2A BCL11A RELA NCOR1 TCF12 POU2F1 LINC01363 piR-37170-007 piR-37663-005
GH01J167148 Enhancer 0.7 Ensembl ENCODE dbSUPER 12 +46.5 46504 3 TCF12 ZFP91 PRDM1 LINC01363 DUSP27 ENSG00000213068 GPA33
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01363 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01363 Gene

Genomic Locations for LINC01363 Gene
chr1:167,175,362-167,195,805
(GRCh38/hg38)
Size:
20,444 bases
Orientation:
Minus strand
chr1:167,145,154-167,165,029
(GRCh37/hg19)
Size:
19,876 bases
Orientation:
Minus strand

Genomic View for LINC01363 Gene

Genes around LINC01363 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01363 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01363 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01363 Gene

Proteins for LINC01363 Gene

Post-translational modifications for LINC01363 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01363 Gene

Domains & Families for LINC01363 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01363 Gene

Function for LINC01363 Gene

Phenotypes From GWAS Catalog for LINC01363 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01363 Gene

Localization for LINC01363 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01363 Gene

Pathways & Interactions for LINC01363 Gene

PathCards logo

SuperPathways for LINC01363 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01363 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01363 Gene

Drugs & Compounds for LINC01363 Gene

No Compound Related Data Available

Transcripts for LINC01363 Gene

mRNA/cDNA for LINC01363 Gene

7 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
4 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
5 NONCODE transcripts :
4 LncBook transcripts :
5 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01363 Gene

No ASD Table

Relevant External Links for LINC01363 Gene

GeneLoc Exon Structure for
LINC01363

Expression for LINC01363 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01363 Gene

genes like me logo Genes that share expression patterns with LINC01363: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01363 Gene

Orthologs for LINC01363 Gene

Evolution for LINC01363 Gene

ENSEMBL:
Gene Tree for LINC01363 (if available)
TreeFam:
Gene Tree for LINC01363 (if available)

No data available for Orthologs for LINC01363 Gene

Paralogs for LINC01363 Gene

No data available for Paralogs for LINC01363 Gene

Variants for LINC01363 Gene

Additional dbSNP identifiers (rs#s) for LINC01363 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01363 Gene

Variant ID Type Subtype PubMed ID
esv2750815 CNV gain 17911159
nsv1078878 OTHER inversion 25765185
nsv3421 CNV insertion 18451855
nsv509557 CNV insertion 20534489
nsv521232 CNV gain+loss 19592680

Additional Variant Information for LINC01363 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01363

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01363 Gene

Disorders for LINC01363 Gene

Additional Disease Information for LINC01363

No disorders were found for LINC01363 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01363 Gene

Publications for LINC01363 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3 54
  2. Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. (PMID: 18940312) Yuan X … Mooser V (American journal of human genetics 2008) 3 54

Products for LINC01363 Gene

Sources for LINC01363 Gene