Aliases for LINC01363 Gene

Subcategory (RNA class) for LINC01363 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01363 Gene

  • Long Intergenic Non-Protein Coding RNA 1363 2 3 5
  • LINC01363 2 5 165
  • RBSG4 2 3
  • NONHSAG003368.2 91
  • HSALNG0008215 164

External Ids for LINC01363 Gene

Summaries for LINC01363 Gene

GeneCards Summary for LINC01363 Gene

LINC01363 (Long Intergenic Non-Protein Coding RNA 1363) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01363 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01363 Gene

Genomics for LINC01363 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01363 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J167195 Enhancer 0.5 Ensembl 600.7 -0.8 -796 2 ZNF629 ZNF692 OSR2 ATF2 WT1 ZFP3 ZNF664 LINC01363 POU2F1 ENSG00000272205 GPA33
GH01J167165 Promoter/Enhancer 1.3 Ensembl ENCODE CraniofacialAtlas 11.9 +29.3 29312 2.3 TEAD4 PRDM10 RFX1 ZNF501 POLR2A ZNF341 ZNF561 ZBTB44 ZBTB20 TCF7L2 GPA33 HSALNG0008213 LOC105371601 LINC01363 STYXL2 POU2F1
GH01J167134 Enhancer 1.1 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.5 +58.5 58508 4.6 POLR2A RAD21 NFE2 NR3C1 TRIM28 FOS SMARCA4 NANOG MAX DACH1 GPA33 STYXL2 LINC01363 RPS17P6
GH01J167327 Promoter/Enhancer 1.8 VISTA EPDnew Ensembl ENCODE 5.3 -134.7 -134668 5.5 RFX1 KDM1A STAT3 ZNF143 PKNOX1 SMAD5 TCF12 IKZF2 POLR2A RCOR1 POU2F1 LINC01363 piR-37170-007 piR-37663-005 CD247
GH01J167173 Enhancer 0.7 Ensembl ENCODE 12.2 +21.8 21804 1.6 PRDM10 ZIC2 OSR2 ZSCAN26 ZNF660 JUND ZEB2 LINC01363 POU2F1 STYXL2 LOC105371601 GPA33 HSALNG0008213
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01363 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01363 Gene

Genomic Locations for LINC01363 Gene
chr1:167,175,362-167,195,805
(GRCh38/hg38)
Size:
20,444 bases
Orientation:
Minus strand
chr1:167,145,154-167,165,029
(GRCh37/hg19)
Size:
19,876 bases
Orientation:
Minus strand

Genomic View for LINC01363 Gene

Genes around LINC01363 on UCSC Golden Path with GeneCards custom track
LINC01363 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01363 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01363 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01363 Gene

Proteins for LINC01363 Gene

Post-translational modifications for LINC01363 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01363 Gene

Domains & Families for LINC01363 Gene

Gene Families for LINC01363 Gene

genes like me logo Genes that share domains with LINC01363: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01363 Gene

Function for LINC01363 Gene

Phenotypes From GWAS Catalog for LINC01363 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01363 Gene

Localization for LINC01363 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01363 Gene

Pathways & Interactions for LINC01363 Gene

PathCards logo

SuperPathways for LINC01363 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01363 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01363 Gene

Drugs & Compounds for LINC01363 Gene

No Compound Related Data Available

Transcripts for LINC01363 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01363 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00004C176D_9606 lncRNA 971 4

Ensembl: ENST00000426709 (view in UCSC) ,

LncBook: HSALNT0017022,

LNCipedia: LINC01363:3,

NONCODE: NONHSAT007382.2,

URS000061BD5A_9606 lncRNA 930 4

Ensembl: ENST00000428030 (view in UCSC) ,

LncBook: HSALNT0017026,

LNCipedia: LINC01363:5,

NONCODE: NONHSAT007383.2,

URS00005EC750_9606 lncRNA 856 4

Ensembl: ENST00000446687 (view in UCSC) ,

LncBook: HSALNT0017028,

LNCipedia: LINC01363:2,

NONCODE: NONHSAT007385.2,

URS000075E66A_9606 lncRNA 1854 3

HGNC: 50598,

RefSeq: NR_110811,

LNCipedia: LINC01363:1,

URS0000EF5162_9606 lncRNA 1764 1

Ensembl: ENST00000457941 (view in UCSC) ,

LINC01363 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01363 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01363 Gene

No ASD Table

Relevant External Links for LINC01363 Gene

GeneLoc Exon Structure for
LINC01363

Expression for LINC01363 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01363 Gene

genes like me logo Genes that share expression patterns with LINC01363: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01363 Gene

Orthologs for LINC01363 Gene

Evolution for LINC01363 Gene

ENSEMBL:
Gene Tree for LINC01363 (if available)
TreeFam:
Gene Tree for LINC01363 (if available)

No data available for Orthologs for LINC01363 Gene

Paralogs for LINC01363 Gene

No data available for Paralogs for LINC01363 Gene

Variants for LINC01363 Gene

Additional dbSNP identifiers (rs#s) for LINC01363 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01363 Gene

Variant ID Type Subtype PubMed ID
esv2750815 CNV gain 17911159
nsv1078878 OTHER inversion 25765185
nsv3421 CNV insertion 18451855
nsv509557 CNV insertion 20534489
nsv521232 CNV gain+loss 19592680

Additional Variant Information for LINC01363 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01363

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01363 Gene

Disorders for LINC01363 Gene

Additional Disease Information for LINC01363

No disorders were found for LINC01363 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01363 Gene

Publications for LINC01363 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3
  2. Population-based genome-wide association studies reveal six loci influencing plasma levels of liver enzymes. (PMID: 18940312) Yuan X … Mooser V (American journal of human genetics 2008) 3

Products for LINC01363 Gene

Sources for LINC01363 Gene