Aliases for LINC01362 Gene

Subcategory (RNA class) for LINC01362 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01362 Gene

  • Long Intergenic Non-Protein Coding RNA 1362 2 3 5
  • LINC01362 2 5 165
  • NONHSAG001926.2 91
  • HSALNG0004748 164

External Ids for LINC01362 Gene

Summaries for LINC01362 Gene

GeneCards Summary for LINC01362 Gene

LINC01362 (Long Intergenic Non-Protein Coding RNA 1362) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01362 include Cerebral Atherosclerosis.

Additional gene information for LINC01362 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01362 Gene

Genomics for LINC01362 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01362 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J082919 Enhancer 0.8 Ensembl ENCODE 0.4 +17.4 17418 2.8 PRDM10 ZNF629 JUND ZXDB ZBTB48 NR2F2 KLF13 RAD21 ZNF366 ZNF843 LINC01362 piR-41245-013 lnc-ADGRL2-9
GH01J082927 Enhancer 0.4 Ensembl 0.4 +24.7 24718 0.2 ZIC2 ATF2 POLR2A SMARCA4 LINC01362 piR-41245-013 lnc-ADGRL2-9
GH01J082930 Enhancer 0.4 Ensembl 0.3 +28.1 28118 1 RFX1 NR2F2 TRIM28 piR-41245-013 LINC01362 lnc-ADGRL2-9
GH01J082978 Enhancer 0.7 Ensembl ENCODE 0.2 +75.9 75875 2.5 TEAD4 RCOR1 DPF2 IRF4 TBX21 ATF7 NANOG ZNF217 SPI1 IKZF2 LINC01361 piR-32804-001 LINC01362
GH01J083102 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 0.1 +199.7 199718 1.4 CREB1 PRDM10 ZNF629 ZNF692 PRDM1 PATZ1 ZNF501 ZNF600 ZNF561 SCRT2 LINC01361 HQ292138 piR-32158-001 LINC01362 LOC107985037 TTLL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01362 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01362 Gene

Genomic Locations for LINC01362 Gene
chr1:82,903,183-83,180,821
(GRCh38/hg38)
Size:
277,639 bases
Orientation:
Plus strand
chr1:83,368,866-83,632,498
(GRCh37/hg19)
Size:
263,633 bases
Orientation:
Plus strand

Genomic View for LINC01362 Gene

Genes around LINC01362 on UCSC Golden Path with GeneCards custom track
LINC01362 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01362 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01362 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01362 Gene

Proteins for LINC01362 Gene

Post-translational modifications for LINC01362 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01362 Gene

Domains & Families for LINC01362 Gene

Gene Families for LINC01362 Gene

genes like me logo Genes that share domains with LINC01362: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01362 Gene

Function for LINC01362 Gene

Phenotypes From GWAS Catalog for LINC01362 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01362 Gene

Localization for LINC01362 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01362 Gene

Pathways & Interactions for LINC01362 Gene

PathCards logo

SuperPathways for LINC01362 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01362 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01362 Gene

Drugs & Compounds for LINC01362 Gene

No Compound Related Data Available

Transcripts for LINC01362 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01362 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS0000216E4D_9606 lncRNA 1712 4

Ensembl: ENST00000452901 (view in UCSC) ,

LncBook: HSALNT0009535,

LNCipedia: LINC01362:1,

NONCODE: NONHSAT004147.2,

URS000005F7CC_9606 lncRNA 338 4

Ensembl: ENST00000419658 (view in UCSC) ,

LncBook: HSALNT0009538,

LNCipedia: LINC01362:3,

NONCODE: NONHSAT004149.2,

URS0000BC4641_9606 lncRNA 1712 2

HGNC: 50596,

RefSeq: NR_147074,

URS0000EEF41A_9606 lncRNA 1134 1

Ensembl: ENST00000659533 (view in UCSC) ,

URS0000EECFD4_9606 lncRNA 760 1

Ensembl: ENST00000669455 (view in UCSC) ,

LINC01362 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01362 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01362 Gene

No ASD Table

Relevant External Links for LINC01362 Gene

GeneLoc Exon Structure for
LINC01362

Expression for LINC01362 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01362 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01362

genes like me logo Genes that share expression patterns with LINC01362: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01362 Gene

Orthologs for LINC01362 Gene

Evolution for LINC01362 Gene

ENSEMBL:
Gene Tree for LINC01362 (if available)
TreeFam:
Gene Tree for LINC01362 (if available)

No data available for Orthologs for LINC01362 Gene

Paralogs for LINC01362 Gene

No data available for Paralogs for LINC01362 Gene

Variants for LINC01362 Gene

Additional dbSNP identifiers (rs#s) for LINC01362 Gene

Additional Variant Information for LINC01362 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01362

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01362 Gene

Disorders for LINC01362 Gene

MalaCards: The human disease database

(1) MalaCards diseases for LINC01362 Gene - From: DISEASES

Disorder Aliases PubMed IDs
cerebral atherosclerosis
  • intracranial arteriosclerosis
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with LINC01362: view

No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01362 Gene

Publications for LINC01362 Gene

  1. A comprehensive survey of non-canonical splice sites in the human transcriptome. (PMID: 25123659) Parada GE … Gysling K (Nucleic acids research 2014) 3

Products for LINC01362 Gene

Sources for LINC01362 Gene