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Aliases for LINC01362 Gene
Subcategory (RNA class) for LINC01362 Gene
lncRNA
Number of RNA Genes sources:
3 / 17
Aliases for LINC01362 Gene
External Ids for LINC01362 Gene
- HGNC: 50596
- Entrez Gene: 103283057
- Ensembl: ENSG00000230817
Summaries for LINC01362 Gene
GeneCards Summary for LINC01362 Gene
LINC01362 (Long Intergenic Non-Protein Coding RNA 1362) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with LINC01362 include Cerebral Atherosclerosis.
Additional gene information for LINC01362 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01362 Gene
Genomics for LINC01362 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for LINC01362 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH01J082919 | Enhancer | 0.8 | Ensembl ENCODE | 0.4 | +17.4 | 17418 | 2.8 | PRDM10 ZNF629 JUND ZXDB ZBTB48 NR2F2 KLF13 RAD21 ZNF366 ZNF843 | LINC01362 piR-41245-013 lnc-ADGRL2-9 | |
| GH01J082927 | Enhancer | 0.4 | Ensembl | 0.4 | +24.7 | 24718 | 0.2 | ZIC2 ATF2 POLR2A SMARCA4 | LINC01362 piR-41245-013 lnc-ADGRL2-9 | |
| GH01J082930 | Enhancer | 0.4 | Ensembl | 0.3 | +28.1 | 28118 | 1 | RFX1 NR2F2 TRIM28 | piR-41245-013 LINC01362 lnc-ADGRL2-9 | |
| GH01J082978 | Enhancer | 0.7 | Ensembl ENCODE | 0.2 | +75.9 | 75875 | 2.5 | TEAD4 RCOR1 DPF2 IRF4 TBX21 ATF7 NANOG ZNF217 SPI1 IKZF2 | LINC01361 piR-32804-001 LINC01362 | |
| GH01J083102 | Enhancer | 1.2 | Ensembl ENCODE CraniofacialAtlas | 0.1 | +199.7 | 199718 | 1.4 | CREB1 PRDM10 ZNF629 ZNF692 PRDM1 PATZ1 ZNF501 ZNF600 ZNF561 SCRT2 | LINC01361 HQ292138 piR-32158-001 LINC01362 LOC107985037 TTLL7 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around LINC01362 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for LINC01362 Gene
Genomic Locations for LINC01362 Gene
- chr1:82,903,183-83,180,821
- (GRCh38/hg38)
- Size:
- 277,639 bases
- Orientation:
- Plus strand
- chr1:83,368,866-83,632,498
- (GRCh37/hg19)
- Size:
- 263,633 bases
- Orientation:
- Plus strand
Genomic View for LINC01362 Gene
Genes around LINC01362 on UCSC Golden Path with GeneCards custom track
LINC01362 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
- Cytogenetic band:
-
- 1p31.1 by HGNC
- 1p31.1 by Entrez Gene
- 1p31.1 by Ensembl
LINC01362 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for LINC01362 Gene
Proteins for LINC01362 Gene
Post-translational modifications for LINC01362 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01362
- Origene Custom Protein Services for LINC01362
No data available for DME Specific Peptides for LINC01362 Gene
Domains & Families for LINC01362 Gene
Gene Families for LINC01362 Gene
No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01362 Gene
Function for LINC01362 Gene
Phenotypes From GWAS Catalog for LINC01362 Gene
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for LINC01362
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01362 Gene
Localization for LINC01362 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01362 Gene
Transcripts for LINC01362 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01362 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS0000216E4D_9606 | lncRNA | 1712 | 4 |
Ensembl: ENST00000452901 (view in UCSC) , LncBook: HSALNT0009535, LNCipedia: LINC01362:1, NONCODE: NONHSAT004147.2, |
| URS000005F7CC_9606 | lncRNA | 338 | 4 |
Ensembl: ENST00000419658 (view in UCSC) , LncBook: HSALNT0009538, LNCipedia: LINC01362:3, NONCODE: NONHSAT004149.2, |
| URS0000BC4641_9606 | lncRNA | 1712 | 2 |
HGNC: 50596, RefSeq: NR_147074, |
| URS0000EEF41A_9606 | lncRNA | 1134 | 1 |
Ensembl: ENST00000659533 (view in UCSC) , |
| URS0000EECFD4_9606 | lncRNA | 760 | 1 |
Ensembl: ENST00000669455 (view in UCSC) , |
LINC01362 in the GeneCards ncRNA compendium hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for LINC01362 Gene
- 1 NCBI additional mRNA sequence :
CRISPR Products
- Browse CRISPR knockouts for LINC01362
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for LINC01362 Gene
- GeneLoc Exon Structure for
- LINC01362
Expression for LINC01362 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01362
Primer Products
Gene Expression Assay Products
No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01362 Gene
Orthologs for LINC01362 Gene
No data available for Orthologs for LINC01362 Gene
Paralogs for LINC01362 Gene
No data available for Paralogs for LINC01362 Gene
Variants for LINC01362 Gene
Additional Variant Information for LINC01362 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- LINC01362
SNP Genotyping and Copy Number Assay Products
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01362 Gene
Disorders for LINC01362 Gene
| Disorder | Aliases | PubMed IDs |
|---|---|---|
| cerebral atherosclerosis |
|
|
Search LINC01362 in MalaCards
View complete list of genes associated with diseases
Additional Disease Information for LINC01362
No data available for UniProtKB/Swiss-Prot and Genatlas for LINC01362 Gene
Publications for LINC01362 Gene
- A comprehensive survey of non-canonical splice sites in the human transcriptome. (PMID: 25123659) Parada GE … Gysling K (Nucleic acids research 2014) 3
Products for LINC01362 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for LINC01362
- Origene Custom Protein Services for LINC01362
- Browse OriGene Inhibitory RNA Products For LINC01362
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for LINC01362
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For LINC01362
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for LINC01362
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for LINC01362
- Search GeneCopoeia for miRNA 3'UTR Target clone products for LINC01362
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for LINC01362
Sources for LINC01362 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB