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LINC01361 Gene(RNA Gene)

Long Intergenic Non-Protein Coding RNA 1361

GCID:
GC01M082973
GIFtS:
11
Genes Participants
UDN Logo

Aliases for LINC01361 Gene

Subcategory (RNA class) for LINC01361 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01361 Gene

  • Long Intergenic Non-Protein Coding RNA 1361 2 3 5

External Ids for LINC01361 Gene

Summaries for LINC01361 Gene

GeneCards Summary for LINC01361 Gene

LINC01361 (Long Intergenic Non-Protein Coding RNA 1361) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01361 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01361 Gene

Genomics for LINC01361 Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for LINC01361 Gene

Promoters and enhancers for LINC01361 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J083150 Enhancer 0.6 Ensembl ENCODE dbSUPER 6.9 -164.9 -164893 1.8 LINC01361 GC01M083215 GC01P083027 LINC01362
GH01J083102 Enhancer 0.9 ENCODE 4.3 -116.7 -116715 0.2 PKNOX1 ARNT INSM2 MZF1 FEZF1 ZNF2 ZEB1 ZNF213 ZNF366 SCRT2 LINC01361 GC01P083027 GC01M083215 LINC01362
GH01J082978 Enhancer 0.3 ENCODE 8.5 +7.3 7332 0.7 NANOG LINC01361 GC01P082950 LINC01362
GH01J083060 Enhancer 0.3 ENCODE 7.4 -74.8 -74789 1.3 NFIB LINC01361 GC01P083027 GC01M083215 LINC01362
GH01J082994 Enhancer 0.2 ENCODE 0.4 -8.8 -8770 0.8 LINC01361 GC01P083011 GC01P082950 LINC01362
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01361 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01361 Gene

Genomic Locations for LINC01361 Gene
chr1:82,973,882-82,986,208
(GRCh38/hg38)
Size:
12,327 bases
Orientation:
Minus strand
chr1:83,439,565-83,451,891
(GRCh37/hg19)
Size:
12,327 bases
Orientation:
Minus strand

Genomic View for LINC01361 Gene

Genes around LINC01361 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01361 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01361 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01361 Gene

Proteins for LINC01361 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01361 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01361 Gene

Domains & Families for LINC01361 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01361 Gene

Function for LINC01361 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01361 Gene

Localization for LINC01361 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01361 Gene

Pathways & Interactions for LINC01361 Gene

SuperPathways for LINC01361 Gene

PathCards logo More details on SuperPathways for LINC01361
No Data Available

Interacting Proteins for LINC01361 Gene

Gene Ontology (GO) - Biological Process for LINC01361 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01361 Gene

Drugs & Compounds for LINC01361 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01361 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for LINC01361 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01361 Gene

No ASD Table

Relevant External Links for LINC01361 Gene

GeneLoc Exon Structure for
LINC01361
ECgene alternative splicing isoforms for
LINC01361

Expression for LINC01361 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01361 Gene

mRNA expression in normal human tissues for LINC01361 Gene
mRNA expression by GTEx for LINC01361 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01361 Gene:

LINC01361
genes like me logo Genes that share expression patterns with LINC01361: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01361 Gene

Orthologs for LINC01361 Gene

Evolution for LINC01361 Gene

ENSEMBL:
Gene Tree for LINC01361 (if available)
TreeFam:
Gene Tree for LINC01361 (if available)

No data available for Orthologs for LINC01361 Gene

Paralogs for LINC01361 Gene

No data available for Paralogs for LINC01361 Gene

Variants for LINC01361 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for LINC01361 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000549907 -- 82,977,271(-) A/G intron_variant
rs1000595779 -- 82,978,140(-) TTCTTTCCTTCCTTCCTTTTCTTTCCTTCCTTCCTT/TTCTTTCCTTCCTTCCTT intron_variant
rs1000721766 -- 82,983,902(-) A/G intron_variant
rs1000773943 -- 82,984,224(-) A/G intron_variant
rs1001003960 -- 82,977,594(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01361 Gene

Variant ID Type Subtype PubMed ID
esv2758947 CNV gain+loss 17122850
nsv1688 CNV insertion 18451855
nsv830381 CNV gain 17160897

Additional Variant Information for LINC01361 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01361

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01361 Gene

Disorders for LINC01361 Gene

Additional Disease Information for LINC01361

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01361 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01361 Gene

Publications for LINC01361 Gene

  1. Molecular evolution of an ancient mariner transposon, Hsmar1, in the human genome. (PMID: 9461395) Robertson HM … Zumpano KL (Gene 1997) 3 58
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3 58

Products for LINC01361 Gene

Sources for LINC01361 Gene

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