LINC01361 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1361

GC01M082973
GIFtS:
10
See more...

Aliases for LINC01361 Gene

Subcategory (RNA class) for LINC01361 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01361 Gene

  • Long Intergenic Non-Protein Coding RNA 1361 2 3 5
  • LINC01361 2 5 165
  • NONHSAG001927.2 91
  • HSALNG0004750 164

External Ids for LINC01361 Gene

Summaries for LINC01361 Gene

GeneCards Summary for LINC01361 Gene

LINC01361 (Long Intergenic Non-Protein Coding RNA 1361) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01361 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01361 Gene

Genomics for LINC01361 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01361 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J083164 Enhancer 0.9 Ensembl ENCODE dbSUPER 8.7 -179.0 -178992 3.2 CREB1 CTBP1 PKNOX1 CUX1 POLR2A DPF2 FOXA1 FOS SMARCA4 SMARCE1 LINC01361 piR-58308-012 piR-32158-001 LINC01362 LOC107985037 TTLL7
GH01J082978 Enhancer 0.7 Ensembl ENCODE 8.5 +7.2 7150 2.5 TEAD4 RCOR1 DPF2 IRF4 TBX21 ATF7 NANOG ZNF217 SPI1 IKZF2 LINC01361 piR-32804-001 LINC01362
GH01J083055 Enhancer 0.8 Ensembl ENCODE 7.2 -69.5 -69517 1 ARID3A TARDBP FOXA1 CTBP1 ZNF444 PKNOX1 ZNF217 GATAD2B CUX1 MBD2 LINC01361 piR-36588-017 HQ292138 LINC01362 LOC107985037 TTLL7
GH01J083102 Enhancer 1.2 Ensembl ENCODE CraniofacialAtlas 4.3 -116.7 -116693 1.4 CREB1 PRDM10 ZNF629 ZNF692 PRDM1 PATZ1 ZNF501 ZNF600 ZNF561 SCRT2 LINC01361 HQ292138 piR-32158-001 LINC01362 LOC107985037 TTLL7
GH01J083150 Enhancer 0.5 Ensembl ENCODE dbSUPER 8.1 -165.1 -165093 3.4 LINC01361 piR-32158-001 piR-58308-012 LINC01362 LOC107985037 TTLL7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01361 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01361 Gene

Genomic Locations for LINC01361 Gene
chr1:82,970,820-82,986,208
(GRCh38/hg38)
Size:
15,389 bases
Orientation:
Minus strand
chr1:83,439,565-83,451,891
(GRCh37/hg19)
Size:
12,327 bases
Orientation:
Minus strand

Genomic View for LINC01361 Gene

Genes around LINC01361 on UCSC Golden Path with GeneCards custom track
LINC01361 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01361 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01361 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01361 Gene

Proteins for LINC01361 Gene

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  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01361 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01361 Gene

Domains & Families for LINC01361 Gene

Gene Families for LINC01361 Gene

HGNC:
genes like me logo Genes that share domains with LINC01361: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01361 Gene

Function for LINC01361 Gene

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  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01361 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01361 Gene

Localization for LINC01361 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01361 Gene

Pathways & Interactions for LINC01361 Gene

PathCards logo

SuperPathways for LINC01361 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01361 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01361 Gene

Drugs & Compounds for LINC01361 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01361 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01361 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000040304B_9606 lncRNA 1526 3

Ensembl: ENST00000452834 (view in UCSC) ,

LNCipedia: LINC01361:4,

NONCODE: NONHSAT004150.2,

URS000009D67F_9606 lncRNA 1476 3

Ensembl: ENST00000421931 (view in UCSC) ,

LncBook: HSALNT0009543,

LNCipedia: LINC01361:1,

URS000075CB5C_9606 lncRNA 1525 2

HGNC: 50595,

RefSeq: NR_110632,

URS0000EEC5F5_9606 lncRNA 4519 1

Ensembl: ENST00000659693 (view in UCSC) ,

URS0000EF7094_9606 lncRNA 1561 1

Ensembl: ENST00000655348 (view in UCSC) ,

LINC01361 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01361 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01361 Gene

No ASD Table

Relevant External Links for LINC01361 Gene

GeneLoc Exon Structure for
LINC01361

Expression for LINC01361 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01361 Gene

mRNA expression in normal human tissues for LINC01361 Gene
mRNA expression by GTEx for LINC01361 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01361

genes like me logo Genes that share expression patterns with LINC01361: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01361 Gene

Orthologs for LINC01361 Gene

Evolution for LINC01361 Gene

ENSEMBL:
Gene Tree for LINC01361 (if available)
TreeFam:
Gene Tree for LINC01361 (if available)

No data available for Orthologs for LINC01361 Gene

Paralogs for LINC01361 Gene

No data available for Paralogs for LINC01361 Gene

Variants for LINC01361 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01361 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01361 Gene

Variant ID Type Subtype PubMed ID
esv2758947 CNV gain+loss 17122850
nsv1688 CNV insertion 18451855
nsv830381 CNV gain 17160897

Additional Variant Information for LINC01361 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01361

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01361 Gene

Disorders for LINC01361 Gene

Additional Disease Information for LINC01361

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for LINC01361 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01361 Gene

Publications for LINC01361 Gene

  1. Molecular evolution of an ancient mariner transposon, Hsmar1, in the human genome. (PMID: 9461395) Robertson HM … Zumpano KL (Gene 1997) 3
  2. Generation and analysis of 280,000 human expressed sequence tags. (PMID: 8889549) Hillier LD … Marra M (Genome research 1996) 3

ExternalLinks

View latest publications for LINC01361 gene in Mastermind

Products for LINC01361 Gene

Sources for LINC01361 Gene