Aliases for LINC01360 Gene

Data sources for LINC01360 Gene:

Subcategory (RNA class) for LINC01360 Gene

lncRNA

Aliases for LINC01360 Gene

External Ids for LINC01360 Gene

Summaries for LINC01360 Gene

GeneCards Summary for LINC01360 Gene

LINC01360 (Long Intergenic Non-Protein Coding RNA 1360) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01360 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01360 Gene

Genomics for LINC01360 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01360 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J073306 Promoter 0.3 EPDnew 250.7 +0.5 547 0.1 LINC01360 piR-33565 LOC105378800 HSALNG0004458 LRRIQ3
GH01J073310 Enhancer 0.2 Ensembl 43 +5.5 5492 0.6 LINC01360 piR-33565 HSALNG0004465 LOC105378800 HSALNG0004458 LRRIQ3
GH01J073065 Enhancer 0.5 Ensembl ENCODE 12.6 -239.3 -239308 2.2 POLR2A RAD21 LINC01360 lnc-FPGT-9 lnc-NEGR1-6 NEGR1
GH01J072845 Enhancer 0.3 Ensembl 10.6 -458.6 -458608 2.4 POU5F1 NANOG LINC01360 piR-61240-007 ENSG00000225087 piR-45012-014 LINC02797 NEGR1
GH01J073176 Enhancer 0.4 Ensembl 8.7 -128.6 -128608 0.4 USF1 ATF7 ATF2 LINC01360 piR-41656 HSALNG0004459 piR-52261-012 LOC105378800 HSALNG0004458 NEGR1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01360 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01360 Gene

Latest Assembly
chr1:73,305,609-73,355,253
(GRCh38/hg38)
Size:
49,645 bases
Orientation:
Plus strand

Previous Assembly
chr1:73,771,853-73,804,560
(GRCh37/hg19 by Entrez Gene)
Size:
32,708 bases
Orientation:
Plus strand

chr1:73,771,853-73,820,934
(GRCh37/hg19 by Ensembl)
Size:
49,082 bases
Orientation:
Plus strand

Genomic View for LINC01360 Gene

Genes around LINC01360 on UCSC Golden Path with GeneCards custom track
LINC01360 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
LINC01360 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01360 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01360 Gene

Proteins for LINC01360 Gene

Post-translational modifications for LINC01360 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01360 Gene

Domains & Families for LINC01360 Gene

Gene Families for LINC01360 Gene

genes like me logo Genes that share domains with LINC01360: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01360 Gene

Function for LINC01360 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01360 Gene

Localization for LINC01360 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01360 Gene

Pathways & Interactions for LINC01360 Gene

PathCards logo

SuperPathways for LINC01360 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01360 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01360 Gene

Drugs & Compounds for LINC01360 Gene

No Compound Related Data Available

Transcripts for LINC01360 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01360 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003E6B77_9606 lncRNA 3875 5

RefSeq: NR_110676,

Ensembl: ENST00000440762 (view in UCSC) ,

LncBook: HSALNT0008972,

LNCipedia: LINC01360:8,

NONCODE: NONHSAT003940.2,

URS00003031EF_9606 lncRNA 443 4

Ensembl: ENST00000411903 (view in UCSC) ,

LncBook: HSALNT0008980,

LNCipedia: LINC01360:13,

NONCODE: NONHSAT003945.2,

URS00009C5FA0_9606 lncRNA 497 3

Ensembl: ENST00000635317 (view in UCSC) ,

LncBook: HSALNT0008976,

LNCipedia: LINC01360:10,

URS0000EF6D40_9606 lncRNA 1075 1

Ensembl: ENST00000661787 (view in UCSC) ,

URS0000EF4854_9606 lncRNA 914 1

Ensembl: ENST00000666103 (view in UCSC) ,

LINC01360 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01360 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01360 Gene

No ASD Table

Relevant External Links for LINC01360 Gene

GeneLoc Exon Structure for
LINC01360

Expression for LINC01360 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01360 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01360

genes like me logo Genes that share expression patterns with LINC01360: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01360 Gene

Orthologs for LINC01360 Gene

Evolution for LINC01360 Gene

ENSEMBL:
Gene Tree for LINC01360 (if available)
TreeFam:
Gene Tree for LINC01360 (if available)

No data available for Orthologs for LINC01360 Gene

Paralogs for LINC01360 Gene

No data available for Paralogs for LINC01360 Gene

Variants for LINC01360 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for LINC01360 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for LINC01360 Gene

Variant ID Type Subtype PubMed ID
esv2758942 CNV gain 17122850
esv2762076 CNV loss 21179565
esv2762152 CNV loss 21179565
esv2764157 CNV loss 21179565
esv3586433 CNV loss 21293372
esv3586434 CNV gain 21293372
esv3893712 CNV gain 25118596
nsv1002115 CNV gain 25217958
nsv1002316 CNV loss 25217958
nsv1010261 CNV loss 25217958
nsv1122364 CNV deletion 24896259
nsv461962 CNV gain 19166990
nsv546572 CNV gain 21841781

Additional Variant Information for LINC01360 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01360

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01360 Gene

Disorders for LINC01360 Gene

Additional Disease Information for LINC01360

No disorders were found for LINC01360 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01360 Gene

Publications for LINC01360 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01360 Gene

Sources for LINC01360 Gene