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Aliases for LINC01359 Gene

Subcategory (RNA class) for LINC01359 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01359 Gene

  • Long Intergenic Non-Protein Coding RNA 1359 2 3 5

External Ids for LINC01359 Gene

Summaries for LINC01359 Gene

GeneCards Summary for LINC01359 Gene

LINC01359 (Long Intergenic Non-Protein Coding RNA 1359) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01359 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01359 Gene

Genomics for LINC01359 Gene

GeneHancer (GH) Regulatory Elements for LINC01359 Gene

Promoters and enhancers for LINC01359 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J065000 Promoter/Enhancer 1.5 Ensembl ENCODE 668.4 +0.1 121 2.8 HDGF PKNOX1 SIN3A FEZF1 GLI4 ZNF2 ZNF48 GLIS2 FOS RUNX3 LINC01359 ENSG00000272506 JAK1 SLC2A3P2 CACHD1
GH01J065308 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11 -307.2 -307205 1.5 FOXA2 ZFP64 ARID4B SIN3A ZNF2 SLC30A9 ZNF766 ZNF143 SP3 MXD4 DNAJC6 LOC102724416 LINC01359 PDE4B GC01M065311
GH01J064505 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 12.9 +496.5 496536 1.8 PKNOX1 SIN3A FEZF1 ZNF2 ZNF121 GLIS2 ZNF213 KLF7 FOS KLF13 CACHD1 ITGB3BP LINC01359 GC01P064556
GH01J064959 Promoter/Enhancer 1.9 Ensembl ENCODE dbSUPER 12.1 +38.8 38788 7.8 ARNT ARID4B SIN3A ZNF48 YY1 ZNF121 GLIS2 ZNF207 KLF7 ATF7 JAK1 ENSG00000272506 LINC01359 SLC2A3P2 RAVER2 GC01P064945
GH01J065253 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 11.9 -252.4 -252415 2.2 HDGF CLOCK SMAD1 FOXA2 ARNT ZFP64 SIN3A DMAP1 ZNF2 YY1 GC01M065252 ENSG00000272506 LINC01359 DNAJC6 COX6CP13
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01359 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01359 Gene

Genomic Locations for LINC01359 Gene
chr1:64,972,225-65,002,489
(GRCh38/hg38)
Size:
30,265 bases
Orientation:
Minus strand
chr1:65,437,908-65,468,159
(GRCh37/hg19)
Size:
30,252 bases
Orientation:
Minus strand

Genomic View for LINC01359 Gene

Genes around LINC01359 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01359 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01359 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01359 Gene

Proteins for LINC01359 Gene

Post-translational modifications for LINC01359 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01359 Gene

Domains & Families for LINC01359 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01359 Gene

Function for LINC01359 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01359 Gene

Localization for LINC01359 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01359 Gene

Pathways & Interactions for LINC01359 Gene

SuperPathways for LINC01359 Gene

No Data Available

Interacting Proteins for LINC01359 Gene

Gene Ontology (GO) - Biological Process for LINC01359 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01359 Gene

Drugs & Compounds for LINC01359 Gene

No Compound Related Data Available

Transcripts for LINC01359 Gene

mRNA/cDNA for LINC01359 Gene

(9) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01359 Gene

No ASD Table

Relevant External Links for LINC01359 Gene

GeneLoc Exon Structure for
LINC01359
ECgene alternative splicing isoforms for
LINC01359

Expression for LINC01359 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01359 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01359 Gene:

LINC01359
genes like me logo Genes that share expression patterns with LINC01359: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01359 Gene

Orthologs for LINC01359 Gene

Evolution for LINC01359 Gene

ENSEMBL:
Gene Tree for LINC01359 (if available)
TreeFam:
Gene Tree for LINC01359 (if available)

No data available for Orthologs for LINC01359 Gene

Paralogs for LINC01359 Gene

No data available for Paralogs for LINC01359 Gene

Variants for LINC01359 Gene

Sequence variations from dbSNP and Humsavar for LINC01359 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000128969 -- 64,980,059(-) G/A intron_variant
rs1000389848 -- 64,982,531(-) C/T intron_variant
rs1000650933 -- 64,990,627(-) A/G intron_variant
rs1000757795 -- 64,984,419(-) A/G intron_variant
rs1000760783 -- 64,984,847(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01359 Gene

Variant ID Type Subtype PubMed ID
nsv945980 CNV duplication 23825009
nsv830059 CNV loss 17160897
nsv1165 CNV deletion 18451855
esv2749185 CNV deletion 23290073
esv2676423 CNV deletion 23128226

Additional Variant Information for LINC01359 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01359

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01359 Gene

Disorders for LINC01359 Gene

Additional Disease Information for LINC01359

No disorders were found for LINC01359 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01359 Gene

Publications for LINC01359 Gene

  1. TSPYL5 SNPs: association with plasma estradiol concentrations and aromatase expression. (PMID: 23518928) Liu M … Weinshilboum RM (Molecular endocrinology (Baltimore, Md.) 2013) 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for LINC01359 Gene

Sources for LINC01359 Gene

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