Aliases for LINC01358 Gene

Subcategory (RNA class) for LINC01358 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01358 Gene

  • Long Intergenic Non-Protein Coding RNA 1358 2 3 5
  • LINC01358 2 168
  • NONHSAG001633 92
  • HSALNG0003964 167
  • NONHSAG001629 92

External Ids for LINC01358 Gene

Previous GeneCards Identifiers for LINC01358 Gene

  • GC01P059020

Summaries for LINC01358 Gene

GeneCards Summary for LINC01358 Gene

LINC01358 (Long Intergenic Non-Protein Coding RNA 1358) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01358 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01358 Gene

Genomics for LINC01358 Gene

GeneHancer (GH) Regulatory Elements for LINC01358 Gene

Promoters and enhancers for LINC01358 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J058934 Enhancer 0.2 Ensembl 500.7 +1.4 1358 0.4 LINC01358 piR-45012-009 lnc-JUN-12 LINC02777
GH01J058925 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.6 -3558 8.6 ZNF217 CTCF TCF12 FOS ZIC2 POLR2A ZNF423 KLF4 EP300 CTBP1 LINC01135 JUN FGGY LINC02777 TACSTD2 LINC01358 piR-35650 lnc-JUN-12
GH01J058894 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.3 -33.4 -33409 10.5 FOXK2 NRF1 POLR2G NCOR1 GTF2E2 PHF8 PHB2 ZFX ZIC2 REST LINC01135 JUN FGGY LINC02777 piR-35650 LINC01358 lnc-JUN-12
GH01J058921 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.4 -11.9 -11941 5.8 TRIM28 MCM3 RBM25 NFIC GATA3 TRIM24 SRF NR3C1 NBN SPI1 LINC01135 MYSM1 JUN FGGY LINC01358 piR-35650 lnc-JUN-12 LINC02777
GH01J058941 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +9.2 9158 6 RBM25 FOXA2 FOXP1 IRF1 RAD21 RARA SOX5 PPARG ZNF316 GATAD2A LINC01135 JUN LINC01358 piR-45012-009 lnc-JUN-12 LINC02777
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01358 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01358 Gene

Genomic Locations for LINC01358 Gene
chr1:58,933,643-59,240,555
(GRCh38/hg38)
Size:
306,913 bases
Orientation:
Plus strand
chr1:59,522,315-59,553,867
(GRCh37/hg19)
Size:
31,553 bases
Orientation:
Plus strand

Genomic View for LINC01358 Gene

Genes around LINC01358 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01358 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01358 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01358 Gene

Proteins for LINC01358 Gene

Post-translational modifications for LINC01358 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01358 Gene

Domains & Families for LINC01358 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01358 Gene

Function for LINC01358 Gene

Phenotypes From GWAS Catalog for LINC01358 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01358 Gene

Localization for LINC01358 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01358 Gene

Pathways & Interactions for LINC01358 Gene

PathCards logo

SuperPathways for LINC01358 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01358 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01358 Gene

Drugs & Compounds for LINC01358 Gene

No Compound Related Data Available

Transcripts for LINC01358 Gene

mRNA/cDNA for LINC01358 Gene

39 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
27 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
13 NONCODE transcripts :
16 LncBook transcripts :
14 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01358 Gene

No ASD Table

Relevant External Links for LINC01358 Gene

GeneLoc Exon Structure for
LINC01358

Expression for LINC01358 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01358 Gene

genes like me logo Genes that share expression patterns with LINC01358: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01358 Gene

Orthologs for LINC01358 Gene

Evolution for LINC01358 Gene

ENSEMBL:
Gene Tree for LINC01358 (if available)
TreeFam:
Gene Tree for LINC01358 (if available)

No data available for Orthologs for LINC01358 Gene

Paralogs for LINC01358 Gene

No data available for Paralogs for LINC01358 Gene

Variants for LINC01358 Gene

Additional dbSNP identifiers (rs#s) for LINC01358 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01358 Gene

Variant ID Type Subtype PubMed ID
nsv1005354 CNV gain 25217958
nsv829959 CNV gain 17160897
nsv829970 CNV gain 17160897

Additional Variant Information for LINC01358 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01358

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01358 Gene

Disorders for LINC01358 Gene

Additional Disease Information for LINC01358

No disorders were found for LINC01358 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01358 Gene

Publications for LINC01358 Gene

No publications were found for LINC01358 Gene.

Products for LINC01358 Gene

Sources for LINC01358 Gene