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Aliases for LINC01358 Gene

Subcategory (RNA class) for LINC01358 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01358 Gene

  • Long Intergenic Non-Protein Coding RNA 1358 2 3 5

External Ids for LINC01358 Gene

Previous GeneCards Identifiers for LINC01358 Gene

  • GC01P059020

Summaries for LINC01358 Gene

GeneCards Summary for LINC01358 Gene

LINC01358 (Long Intergenic Non-Protein Coding RNA 1358) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01358 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01358 Gene

Genomics for LINC01358 Gene

GeneHancer (GH) Regulatory Elements for LINC01358 Gene

Promoters and enhancers for LINC01358 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J058925 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -3.7 -3710 8.3 PKNOX1 ARNT SIN3A TCF12 FOS DEK REST SMARCB1 SREBF1 MAFF LINC01135 JUN FGGY LOC105378753 TACSTD2 LINC01358
GH01J058921 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.4 -10.7 -10670 3.3 HDAC1 PKNOX1 MZF1 RAD21 ZNF23 IKZF2 RUNX3 ZBTB2 GATAD2B ZEB2 LINC01135 JUN FGGY LINC01358 LOC105378753
GH01J058941 Enhancer 1 Ensembl ENCODE dbSUPER 0.4 +9.0 9011 2.7 SOX5 SOX13 GATAD2A FOXA2 FOXA3 MNT PPARG ETV5 RAD21 RARA LINC01135 JUN LINC01358 PHBP3
GH01J058965 Enhancer 1.1 Ensembl ENCODE 0.3 +35.9 35869 7.3 PKNOX1 FOXA2 YY1 TCF12 ZNF766 GATA2 ZNF207 ATF7 RUNX3 RXRA LINC01135 JUN PHBP3 LINC01358
GH01J059018 Promoter/Enhancer 1.5 Ensembl ENCODE dbSUPER 0.2 +86.1 86139 2.7 HDAC1 TAF9B ZBTB40 BATF KLF5 IRF4 RAD21 YY1 ZNF766 ATF7 LINC01135 JUN MYSM1 PHBP3 ENSG00000241042 LINC01358
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01358 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01358 Gene

Genomic Locations for LINC01358 Gene
chr1:58,933,643-59,240,555
(GRCh38/hg38)
Size:
306,913 bases
Orientation:
Plus strand
chr1:59,522,315-59,553,867
(GRCh37/hg19)
Size:
31,553 bases
Orientation:
Plus strand

Genomic View for LINC01358 Gene

Genes around LINC01358 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01358 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01358 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01358 Gene

Proteins for LINC01358 Gene

Post-translational modifications for LINC01358 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01358 Gene

Domains & Families for LINC01358 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01358 Gene

Function for LINC01358 Gene

Phenotypes From GWAS Catalog for LINC01358 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01358 Gene

Localization for LINC01358 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01358 Gene

Pathways & Interactions for LINC01358 Gene

SuperPathways for LINC01358 Gene

No Data Available

Interacting Proteins for LINC01358 Gene

Gene Ontology (GO) - Biological Process for LINC01358 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01358 Gene

Drugs & Compounds for LINC01358 Gene

No Compound Related Data Available

Transcripts for LINC01358 Gene

mRNA/cDNA for LINC01358 Gene

(11) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(12) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01358 Gene

No ASD Table

Relevant External Links for LINC01358 Gene

GeneLoc Exon Structure for
LINC01358
ECgene alternative splicing isoforms for
LINC01358

Expression for LINC01358 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01358 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01358 Gene:

LINC01358
genes like me logo Genes that share expression patterns with LINC01358: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01358 Gene

Orthologs for LINC01358 Gene

Evolution for LINC01358 Gene

ENSEMBL:
Gene Tree for LINC01358 (if available)
TreeFam:
Gene Tree for LINC01358 (if available)

No data available for Orthologs for LINC01358 Gene

Paralogs for LINC01358 Gene

No data available for Paralogs for LINC01358 Gene

Variants for LINC01358 Gene

Sequence variations from dbSNP and Humsavar for LINC01358 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000001409 -- 59,088,449(+) T/A downstream_transcript_variant
rs1000035075 -- 59,084,464(+) G/A intron_variant
rs1000072212 -- 59,078,017(+) C/G intron_variant
rs1000172131 -- 59,038,453(+) T/C intron_variant
rs1000188816 -- 59,072,418(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01358 Gene

Variant ID Type Subtype PubMed ID
nsv829970 CNV gain 17160897
nsv829959 CNV gain 17160897
nsv1005354 CNV gain 25217958

Additional Variant Information for LINC01358 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01358

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01358 Gene

Disorders for LINC01358 Gene

Additional Disease Information for LINC01358

No disorders were found for LINC01358 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01358 Gene

Publications for LINC01358 Gene

No publications were found for LINC01358 Gene.

Products for LINC01358 Gene

Sources for LINC01358 Gene

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