LINC01357 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1357

GC01P112852
GIFtS:
8
See more...

Aliases for LINC01357 Gene

Subcategory (RNA class) for LINC01357 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01357 Gene

  • Long Intergenic Non-Protein Coding RNA 1357 2 3 5
  • LINC01357 2 5
  • HP08777 2 3
  • Hypothetical Protein HP08777 3
  • NONHSAG002454.2 91
  • Lnc-FAM19A3-2 165
  • HSALNG0006141 164

External Ids for LINC01357 Gene

Summaries for LINC01357 Gene

GeneCards Summary for LINC01357 Gene

LINC01357 (Long Intergenic Non-Protein Coding RNA 1357) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01357 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01357 Gene

Genomics for LINC01357 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01357 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J112849 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 607.3 +1.6 1631 4.8 PRDM10 RFX1 ZNF692 FOXA1 ZIC2 PATZ1 ZNF501 POLR2A ZNF341 SCRT2 LINC01357 LINC01356 piR-35674-032 piR-33422-019 SLC16A1 TAFA3
GH01J112816 Enhancer 1.3 Ensembl ENCODE dbSUPER 5.4 -30.0 -30001 6.8 ATF7 TEAD4 PRDM10 ZNF629 LEF1 IKZF1 KDM1A ZNF692 JUND PRDM1 piR-30444-016 lnc-FAM19A3-5 LRIG2 ENSG00000232499 ST7L PPM1J RHOC LRIG2-DT ENSG00000225075 MOV10
GH01J112807 Enhancer 1.2 Ensembl ENCODE dbSUPER 4.8 -41.9 -41874 5.4 CTCF TEAD4 IKZF1 JUND ZNF143 ZIC2 PATZ1 REST RAD21 BRD9 PPM1J RHOC ENSG00000232499 KCND3 LINC01357 piR-41245-017 RF00017-295 lnc-FAM19A3-6 TAFA3 SLC16A1
GH01J112844 Enhancer 0.4 Ensembl 5.8 -5.7 -5669 0.2 CEBPB ZBTB33 ATF2 piR-43325-006 KCND3 LINC01357 LINC01356 lnc-FAM19A3-6 SLC16A1 TAFA3
GH01J112835 Enhancer 0.3 Ensembl 6.1 -13.3 -13270 1.4 SCRT2 JUND LINC01357 piR-41406-005 piR-41245-018 LINC01356 lnc-FAM19A3-6 TAFA3 SLC16A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01357 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01357 Gene

Genomic Locations for LINC01357 Gene
chr1:112,849,770-112,885,214
(GRCh38/hg38)
Size:
35,445 bases
Orientation:
Plus strand
chr1:113,392,650-113,420,493
(GRCh37/hg19)
Size:
27,844 bases
Orientation:
Plus strand

Genomic View for LINC01357 Gene

Genes around LINC01357 on UCSC Golden Path with GeneCards custom track
LINC01357 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01357 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01357 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01357 Gene

Proteins for LINC01357 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01357 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01357 Gene

Domains & Families for LINC01357 Gene

Gene Families for LINC01357 Gene

HGNC:
genes like me logo Genes that share domains with LINC01357: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01357 Gene

Function for LINC01357 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01357 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01357 Gene

Localization for LINC01357 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01357 Gene

Pathways & Interactions for LINC01357 Gene

PathCards logo

SuperPathways for LINC01357 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01357 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01357 Gene

Drugs & Compounds for LINC01357 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for LINC01357 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01357 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00003DEB33_9606 lncRNA 587 3

Ensembl: ENST00000456651 (view in UCSC) ,

LNCipedia: lnc-FAM19A3-2:1,

NONCODE: NONHSAT005290.2,

URS0000EF50C2_9606 lncRNA 749 2

HGNC: 50588,

Ensembl: ENST00000658577 (view in UCSC) ,

URS00003B8635_9606 lncRNA 490 2

Ensembl: ENST00000422022 (view in UCSC) ,

LNCipedia: lnc-FAM19A3-2:2,

URS00008BF664_9606 lncRNA 766 3

LncBook: HSALNT0012838,

LNCipedia: lnc-FAM19A3-2:3,

NONCODE: NONHSAT005289.2,

URS0000D58DCB_9606 lncRNA 804 2

LncBook: HSALNT0012840,

LNCipedia: lnc-FAM19A3-2:6,

LINC01357 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01357 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01357 Gene

No ASD Table

Relevant External Links for LINC01357 Gene

GeneLoc Exon Structure for
LINC01357

Expression for LINC01357 Gene

Products:

  1. Primer

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01357

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01357 Gene

Orthologs for LINC01357 Gene

Evolution for LINC01357 Gene

ENSEMBL:
Gene Tree for LINC01357 (if available)
TreeFam:
Gene Tree for LINC01357 (if available)

No data available for Orthologs for LINC01357 Gene

Paralogs for LINC01357 Gene

No data available for Paralogs for LINC01357 Gene

Variants for LINC01357 Gene

Additional dbSNP identifiers (rs#s) for LINC01357 Gene

Additional Variant Information for LINC01357 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01357

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01357 Gene

Disorders for LINC01357 Gene

Additional Disease Information for LINC01357

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01357 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01357 Gene

Publications for LINC01357 Gene

  1. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PMID: 21697133) Oshikawa M … Kato S (Investigative ophthalmology & visual science 2011) 3

No data available for Mastermind for LINC01357 Gene

Products for LINC01357 Gene

Sources for LINC01357 Gene