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Aliases for LINC01356 Gene

Subcategory (RNA class) for LINC01356 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01356 Gene

  • Long Intergenic Non-Protein Coding RNA 1356 2 3 5

External Ids for LINC01356 Gene

Summaries for LINC01356 Gene

GeneCards Summary for LINC01356 Gene

LINC01356 (Long Intergenic Non-Protein Coding RNA 1356) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01356 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01356 Gene

Genomics for LINC01356 Gene

GeneHancer (GH) Regulatory Elements for LINC01356 Gene

Promoters and enhancers for LINC01356 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I112849 Promoter/Enhancer 1.3 Ensembl ENCODE 557.6 +0.2 247 2.5 ZNF2 ZNF335 GLIS2 SCRT2 ZNF391 ZBTB11 CEBPB USF2 ZEB2 ZFP69B LINC01356 HP08777
GH01I112816 Enhancer 1.4 Ensembl ENCODE dbSUPER 6.5 +30.9 30874 6.8 HDGF PKNOX1 ARNT FEZF1 ZNF2 ZNF766 FOS ZNF592 MEF2D ZNF610 GC01P112820 LRIG2 LOC100421402 ST7L PPM1J RHOC LOC100996251 ENSG00000225075 MOV10 KCND3
GH01I112865 Enhancer 0.9 Ensembl ENCODE 5.3 -17.2 -17198 4.9 ESRRA ZSCAN4 JUN FOSL1 FOS SMARCE1 CEBPB ZEB2 DPF2 ATF2 SLC16A1 LINC01356 LOC105378911 GC01P112858 GC01M112861 HP08777
GH01I112840 Enhancer 0.9 Ensembl ENCODE 0.4 +9.6 9642 0.8 KLF1 PKNOX1 FOXA2 KLF17 FEZF1 BCL11B ZNF121 ZFHX2 GATA3 POLR2A HP08777 LINC01356 GC01P112820
GH01I112854 Enhancer 0.4 Ensembl 0.8 -4.3 -4258 0.6 CEBPB ZBTB33 HP08777 GC01P112857 LINC01356
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01356 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01356 Gene

Genomic Locations for LINC01356 Gene
chr1:112,820,169-112,850,643
(GRCh38/hg38)
Size:
30,475 bases
Orientation:
Minus strand
chr1:113,362,792-113,393,265
(GRCh37/hg19)

Genomic View for LINC01356 Gene

Genes around LINC01356 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01356 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01356 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01356 Gene

Proteins for LINC01356 Gene

  • Protein details for LINC01356 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9X3-YA026_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01356
    Protein Accession:
    Q8N9X3

    Protein attributes for LINC01356 Gene

    Size:
    169 amino acids
    Molecular mass:
    18887 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01356 Gene

Post-translational modifications for LINC01356 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01356 Gene

Domains & Families for LINC01356 Gene

Protein Domains for LINC01356 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with LINC01356: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01356 Gene

Function for LINC01356 Gene

Phenotypes From GWAS Catalog for LINC01356 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01356 Gene

Localization for LINC01356 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01356 Gene

Pathways & Interactions for LINC01356 Gene

SuperPathways for LINC01356 Gene

No Data Available

Interacting Proteins for LINC01356 Gene

Gene Ontology (GO) - Biological Process for LINC01356 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01356 Gene

Drugs & Compounds for LINC01356 Gene

No Compound Related Data Available

Transcripts for LINC01356 Gene

mRNA/cDNA for LINC01356 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01356 Gene

No ASD Table

Relevant External Links for LINC01356 Gene

GeneLoc Exon Structure for
LINC01356
ECgene alternative splicing isoforms for
LINC01356

Expression for LINC01356 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01356 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01356 Gene:

LINC01356
genes like me logo Genes that share expression patterns with LINC01356: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01356 Gene

Orthologs for LINC01356 Gene

Evolution for LINC01356 Gene

ENSEMBL:
Gene Tree for LINC01356 (if available)
TreeFam:
Gene Tree for LINC01356 (if available)

No data available for Orthologs for LINC01356 Gene

Paralogs for LINC01356 Gene

No data available for Paralogs for LINC01356 Gene

Variants for LINC01356 Gene

Sequence variations from dbSNP and Humsavar for LINC01356 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000045570 -- 112,830,257(-) G/A intron_variant
rs1000117981 -- 112,833,088(-) C/T intron_variant
rs1000142105 -- 112,841,468(-) T/G intron_variant
rs1000165141 -- 112,823,530(-) A/G intron_variant
rs1000393386 -- 112,825,268(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01356 Gene

Variant ID Type Subtype PubMed ID
dgv290n100 CNV loss 25217958
dgv83e212 CNV gain 25503493
esv1681392 CNV insertion 17803354
esv24626 CNV loss 19812545
esv3584026 CNV gain 25503493
esv3587220 CNV loss 21293372
esv3587221 CNV loss 21293372
nsv1004102 CNV gain 25217958
nsv522967 CNV loss 19592680
nsv547567 CNV loss 21841781
nsv818378 CNV gain 17921354
nsv999915 CNV gain 25217958

Additional Variant Information for LINC01356 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01356

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01356 Gene

Disorders for LINC01356 Gene

Additional Disease Information for LINC01356

No disorders were found for LINC01356 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01356 Gene

Publications for LINC01356 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01356 Gene

Sources for LINC01356 Gene

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