Aliases for LINC01356 Gene

Subcategory (RNA class) for LINC01356 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01356 Gene

  • Long Intergenic Non-Protein Coding RNA 1356 2 3 5
  • LINC01356 2 5 165
  • Putative Uncharacterized Protein Encoded By LINC01356 4
  • NONHSAG002452.2 91
  • HSALNG0006139 164

External Ids for LINC01356 Gene

Previous GeneCards Identifiers for LINC01356 Gene

  • GC01M112820
  • GC01M112815
  • GC01M112816

Summaries for LINC01356 Gene

GeneCards Summary for LINC01356 Gene

LINC01356 (Long Intergenic Non-Protein Coding RNA 1356) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01356 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01356 Gene

Genomics for LINC01356 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01356 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J112849 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 607.1 +23.2 23224 4.8 PRDM10 RFX1 ZNF692 FOXA1 ZIC2 PATZ1 ZNF501 POLR2A ZNF341 SCRT2 LINC01357 LINC01356 piR-35674-032 piR-33422-019 SLC16A1 TAFA3
GH01J112870 Enhancer 0.8 Ensembl ENCODE 600.7 +1.6 1576 4.7 IKZF1 PRDM1 MTA1 ZNF24 HDAC1 ZNF561 MTA3 CTBP1 GATAD2A OSR2 LINC01356 LOC105378911 LRIG2 LRIG2-DT PPM1J RHOC SLC16A1 LINC01357 TAFA3
GH01J112816 Enhancer 1.3 Ensembl ENCODE dbSUPER 6.5 +54.9 54856 6.8 ATF7 TEAD4 PRDM10 ZNF629 LEF1 IKZF1 KDM1A ZNF692 JUND PRDM1 piR-30444-016 lnc-FAM19A3-5 LRIG2 ENSG00000232499 ST7L PPM1J RHOC LRIG2-DT ENSG00000225075 MOV10
GH01J112865 Enhancer 0.8 Ensembl ENCODE 5.4 +7.0 6982 5.3 CTCF JUND ZSCAN4 ESR1 FOS JUN ESRRA ATF2 FOSL1 DPF2 SLC16A1 LINC01356 LOC105378911 lnc-FAM19A3-7 LINC01357 TAFA3
GH01J112877 Enhancer 0.8 Ensembl 0.7 -3.5 -3476 1 IKZF1 ETV6 JUND PKNOX1 REST DPF2 HDAC1 SOX6 UBTF MTA3 LINC01356 MIR11399 LINC01357 SLC16A1 TAFA3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01356 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01356 Gene

Genomic Locations for LINC01356 Gene
chr1:112,813,210-112,874,625
(GRCh38/hg38)
Size:
61,416 bases
Orientation:
Minus strand
chr1:113,362,792-113,393,265
(GRCh37/hg19)
Size:
30,474 bases
Orientation:
Minus strand

Genomic View for LINC01356 Gene

Genes around LINC01356 on UCSC Golden Path with GeneCards custom track
LINC01356 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01356 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01356 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01356 Gene

Proteins for LINC01356 Gene

  • Protein details for LINC01356 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9X3-YA026_HUMAN
    Recommended name:
    Putative uncharacterized protein encoded by LINC01356
    Protein Accession:
    Q8N9X3

    Protein attributes for LINC01356 Gene

    Size:
    169 amino acids
    Molecular mass:
    18887 Da
    Quaternary structure:
    No Data Available

neXtProt entry for LINC01356 Gene

Post-translational modifications for LINC01356 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01356 Gene

Domains & Families for LINC01356 Gene

Gene Families for LINC01356 Gene

Protein Domains for LINC01356 Gene

ProtoNet:
genes like me logo Genes that share domains with LINC01356: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01356 Gene

Function for LINC01356 Gene

Phenotypes From GWAS Catalog for LINC01356 Gene

Phenotypes for LINC01356 Gene

GenomeRNAi human phenotypes for LINC01356:
genes like me logo Genes that share phenotypes with LINC01356: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01356 Gene

Localization for LINC01356 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01356 Gene

Pathways & Interactions for LINC01356 Gene

PathCards logo

SuperPathways for LINC01356 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01356 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01356 Gene

Drugs & Compounds for LINC01356 Gene

No Compound Related Data Available

Transcripts for LINC01356 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01356 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075D770_9606 lncRNA 1824 4

HGNC: 50587,

RefSeq: NR_103746,

LNCipedia: LINC01356:3,

NONCODE: NONHSAT005284.2,

URS00002405B3_9606 lncRNA 767 3

Ensembl: ENST00000433505 (view in UCSC) ,

LNCipedia: LINC01356:4,

NONCODE: NONHSAT005285.2,

URS00003824E8_9606 lncRNA 702 3

Ensembl: ENST00000449572 (view in UCSC) ,

LncBook: HSALNT0012833,

LNCipedia: LINC01356:6,

URS0000025363_9606 lncRNA 1819 2

Ensembl: ENST00000401018 (view in UCSC) ,

LNCipedia: LINC01356:2,

URS0000EEE834_9606 lncRNA 1430 1

Ensembl: ENST00000661136 (view in UCSC) ,

LINC01356 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01356 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01356 Gene

No ASD Table

Relevant External Links for LINC01356 Gene

GeneLoc Exon Structure for
LINC01356

Expression for LINC01356 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01356 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01356

genes like me logo Genes that share expression patterns with LINC01356: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01356 Gene

Orthologs for LINC01356 Gene

Evolution for LINC01356 Gene

ENSEMBL:
Gene Tree for LINC01356 (if available)
TreeFam:
Gene Tree for LINC01356 (if available)

No data available for Orthologs for LINC01356 Gene

Paralogs for LINC01356 Gene

No data available for Paralogs for LINC01356 Gene

Variants for LINC01356 Gene

Additional dbSNP identifiers (rs#s) for LINC01356 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01356 Gene

Variant ID Type Subtype PubMed ID
dgv290n100 CNV loss 25217958
dgv83e212 CNV gain 25503493
esv1681392 CNV insertion 17803354
esv24626 CNV loss 19812545
esv3584026 CNV gain 25503493
esv3587220 CNV loss 21293372
esv3587221 CNV loss 21293372
nsv1004102 CNV gain 25217958
nsv522967 CNV loss 19592680
nsv547567 CNV loss 21841781
nsv818378 CNV gain 17921354
nsv999915 CNV gain 25217958

Additional Variant Information for LINC01356 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01356

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01356 Gene

Disorders for LINC01356 Gene

No disorders were found for LINC01356 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01356 Gene

Publications for LINC01356 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

Products for LINC01356 Gene

Sources for LINC01356 Gene