Aliases for LINC01354 Gene

Subcategory (RNA class) for LINC01354 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for LINC01354 Gene

  • Long Intergenic Non-Protein Coding RNA 1354 2 3 5
  • LINC01354 2 170
  • HSALNG0011601 169
  • NONHSAG004677 94

External Ids for LINC01354 Gene

Summaries for LINC01354 Gene

GeneCards Summary for LINC01354 Gene

LINC01354 (Long Intergenic Non-Protein Coding RNA 1354) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01354 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01354 Gene

Genomics for LINC01354 Gene

GeneHancer (GH) Regulatory Elements for LINC01354 Gene

Promoters and enhancers for LINC01354 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01354 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01354 Gene

Genomic Locations for LINC01354 Gene
chr1:234,527,887-234,531,803
(GRCh38/hg38)
Size:
3,917 bases
Orientation:
Minus strand
chr1:234,663,637-234,667,525
(GRCh37/hg19)
Size:
3,889 bases
Orientation:
Minus strand

Genomic View for LINC01354 Gene

Genes around LINC01354 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01354 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01354 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01354 Gene

Proteins for LINC01354 Gene

Post-translational modifications for LINC01354 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01354 Gene

Domains & Families for LINC01354 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01354 Gene

Function for LINC01354 Gene

Phenotypes From GWAS Catalog for LINC01354 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01354 Gene

Localization for LINC01354 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01354 Gene

Pathways & Interactions for LINC01354 Gene

PathCards logo

SuperPathways for LINC01354 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01354 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01354 Gene

Drugs & Compounds for LINC01354 Gene

No Compound Related Data Available

Transcripts for LINC01354 Gene

mRNA/cDNA for LINC01354 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(6) RNACentral transcripts :
(7) LNCipedia transcripts :
(3) LncBook transcripts :
(2) NONCODE transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01354 Gene

No ASD Table

Relevant External Links for LINC01354 Gene

GeneLoc Exon Structure for
LINC01354
ECgene alternative splicing isoforms for
LINC01354

Expression for LINC01354 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01354 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01354 Gene:

LINC01354
genes like me logo Genes that share expression patterns with LINC01354: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01354 Gene

Orthologs for LINC01354 Gene

Evolution for LINC01354 Gene

ENSEMBL:
Gene Tree for LINC01354 (if available)
TreeFam:
Gene Tree for LINC01354 (if available)

No data available for Orthologs for LINC01354 Gene

Paralogs for LINC01354 Gene

No data available for Paralogs for LINC01354 Gene

Variants for LINC01354 Gene

Sequence variations from dbSNP and Humsavar for LINC01354 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000314126 -- 234,528,345(-) G/A non_coding_transcript_variant
rs1000484796 -- 234,532,236(-) C/G upstream_transcript_variant
rs1000825764 -- 234,530,705(-) T/C/G intron_variant
rs1001174739 -- 234,530,381(-) G/T intron_variant
rs1001263567 -- 234,529,883(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01354 Gene

Variant ID Type Subtype PubMed ID
nsv832914 CNV loss 17160897

Additional Variant Information for LINC01354 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01354 Gene

Disorders for LINC01354 Gene

Additional Disease Information for LINC01354

No disorders were found for LINC01354 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01354 Gene

Publications for LINC01354 Gene

  1. LINC01354 interacting with hnRNP-D contributes to the proliferation and metastasis in colorectal cancer through activating Wnt/β-catenin signaling pathway. (PMID: 30987669) Li J … Huang S (Journal of experimental & clinical cancer research : CR 2019) 3 56
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 56

Products for LINC01354 Gene

Sources for LINC01354 Gene