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Aliases for LINC01354 Gene

Subcategory (RNA class) for LINC01354 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01354 Gene

  • Long Intergenic Non-Protein Coding RNA 1354 2 3 5

External Ids for LINC01354 Gene

Summaries for LINC01354 Gene

GeneCards Summary for LINC01354 Gene

LINC01354 (Long Intergenic Non-Protein Coding RNA 1354) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01354 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01354 Gene

Genomics for LINC01354 Gene

GeneHancer (GH) Regulatory Elements for LINC01354 Gene

Promoters and enhancers for LINC01354 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J234598 Promoter/Enhancer 2.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.5 -80.1 -80068 26.9 CLOCK MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 IRF2BP2 ARID4B RPS21P1 LOC102724100 LOC105373206 GGPS1 TARBP1 LINC01354 ENSG00000230404 B3GALNT2
GH01J234527 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 14.5 -5.7 -5741 20.1 ZFP64 YBX1 FEZF1 YY1 ZNF213 SP3 NFYC MEF2D SSRP1 ZNF610 ARID4B RPS21P1 IRF2BP2 LINC01354 B3GALNT2 ENSG00000212144 GGPS1 LOC101927765 GC01P234531 GC01M234541
GH01J234368 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 10.8 +159.8 159793 6 MLX DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 SP3 PPARGC1A COA6 LOC101927765 ENSG00000273367 ARID4B IRF2BP2 LINC01354 GGPS1 RPS15P2
GH01J234520 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 8 +9.3 9304 4.3 HDGF PKNOX1 FOXA2 SMAD1 MLX NEUROD1 SIN3A FEZF1 ZNF2 YY1 ARID4B IRF2BP2 RPS21P1 ENSG00000212144 LINC01354 GC01P234531 TARBP1
GH01J234552 Enhancer 1.4 Ensembl ENCODE dbSUPER 7.9 -22.4 -22438 2.8 HDGF PKNOX1 SMAD1 ARNT FEZF1 ZNF2 ZNF766 ZNF213 REST ZNF592 TARBP1 ARID4B ENSG00000212144 RPS21P1 GGPS1 LINC01354 GC01M234541 ENSG00000230404
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01354 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01354 Gene

Genomic Locations for LINC01354 Gene
chr1:234,527,891-234,531,779
(GRCh38/hg38)
Size:
3,889 bases
Orientation:
Minus strand
chr1:234,663,637-234,667,525
(GRCh37/hg19)
Size:
3,889 bases
Orientation:
Minus strand

Genomic View for LINC01354 Gene

Genes around LINC01354 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01354 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01354 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01354 Gene

Proteins for LINC01354 Gene

Post-translational modifications for LINC01354 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01354 Gene

Domains & Families for LINC01354 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01354 Gene

Function for LINC01354 Gene

Phenotypes From GWAS Catalog for LINC01354 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01354 Gene

Localization for LINC01354 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01354 Gene

Pathways & Interactions for LINC01354 Gene

SuperPathways for LINC01354 Gene

No Data Available

Interacting Proteins for LINC01354 Gene

Gene Ontology (GO) - Biological Process for LINC01354 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01354 Gene

Drugs & Compounds for LINC01354 Gene

No Compound Related Data Available

Transcripts for LINC01354 Gene

mRNA/cDNA for LINC01354 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01354 Gene

No ASD Table

Relevant External Links for LINC01354 Gene

GeneLoc Exon Structure for
LINC01354
ECgene alternative splicing isoforms for
LINC01354

Expression for LINC01354 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01354 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01354 Gene:

LINC01354
genes like me logo Genes that share expression patterns with LINC01354: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01354 Gene

Orthologs for LINC01354 Gene

Evolution for LINC01354 Gene

ENSEMBL:
Gene Tree for LINC01354 (if available)
TreeFam:
Gene Tree for LINC01354 (if available)

No data available for Orthologs for LINC01354 Gene

Paralogs for LINC01354 Gene

No data available for Paralogs for LINC01354 Gene

Variants for LINC01354 Gene

Sequence variations from dbSNP and Humsavar for LINC01354 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000314126 -- 234,528,345(-) G/A non_coding_transcript_variant
rs1000484796 -- 234,532,236(-) C/G upstream_transcript_variant
rs1000825764 -- 234,530,705(-) T/G intron_variant
rs1001174739 -- 234,530,381(-) G/T intron_variant
rs1001263567 -- 234,529,883(-) C/T non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01354 Gene

Variant ID Type Subtype PubMed ID
nsv832914 CNV loss 17160897

Additional Variant Information for LINC01354 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01354

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01354 Gene

Disorders for LINC01354 Gene

Additional Disease Information for LINC01354

No disorders were found for LINC01354 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01354 Gene

Publications for LINC01354 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01354 Gene

Sources for LINC01354 Gene

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