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Aliases for LINC01353 Gene

Subcategory (RNA class) for LINC01353 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01353 Gene

  • Long Intergenic Non-Protein Coding RNA 1353 2 3 5

External Ids for LINC01353 Gene

Summaries for LINC01353 Gene

GeneCards Summary for LINC01353 Gene

LINC01353 (Long Intergenic Non-Protein Coding RNA 1353) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01353 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01353 Gene

Genomics for LINC01353 Gene

GeneHancer (GH) Regulatory Elements for LINC01353 Gene

Promoters and enhancers for LINC01353 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I203284 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 556.1 +1.4 1445 8.4 HDGF PKNOX1 FOXA2 SMAD1 ARNT ARID4B YBX1 IRF4 ZNF766 E2F8 LINC01353 BTG2 RNU6-487P KDM5B FMOD LOC100131747 RABIF ADIPOR1 KLHL12 LINC01136
GH01I203276 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 6.4 -6.8 -6764 7.9 HDGF PKNOX1 FOXA2 RB1 ZNF48 ZNF335 ZNF121 GLIS2 ATF7 IKZF2 BTG2 SNRPE LINC01136 RNU6-487P LOC100506672 KDM5B ZBED6 ZC3H11A FMOD LOC100131747
GH01I203298 Promoter/Enhancer 2.5 EPDnew Ensembl ENCODE dbSUPER 0.4 +17.4 17389 12.2 FEZF1 YBX1 YY1 ZNF213 ZNF143 NFYC MEF2D ZNF610 GLIS1 NBN BTG2 LINC01136 ZC3H11A KLHL12 HNRNPA1P59 SNRPE ZBED6 FMOD PRELP RPS27P8
GH01I203272 Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 0.4 -12.8 -12774 3.6 HDGF ARNT SIN3A FEZF1 ZNF2 ZBTB7B IRF4 E2F8 ZNF207 ZNF143 CHIT1 BTG2 LINC01136 RNU6-487P FMOD LOC100131747 OPTC PRELP LINC01353 GC01P203263
GH01I203295 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +9.4 9365 2.7 POLR2A IKZF1 EBF1 GLI4 EZH2 RNU6-487P CHIT1 BTG2 LINC01136 LINC01353
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01353 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01353 Gene

Genomic Locations for LINC01353 Gene
chr1:203,287,152-203,288,801
(GRCh38/hg38)
Size:
1,650 bases
Orientation:
Plus strand
chr1:203,256,280-203,257,929
(GRCh37/hg19)

Genomic View for LINC01353 Gene

Genes around LINC01353 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01353 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01353 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01353 Gene

Proteins for LINC01353 Gene

Post-translational modifications for LINC01353 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01353 Gene

Domains & Families for LINC01353 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01353 Gene

Function for LINC01353 Gene

Phenotypes From GWAS Catalog for LINC01353 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01353 Gene

Localization for LINC01353 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01353 Gene

Pathways & Interactions for LINC01353 Gene

SuperPathways for LINC01353 Gene

No Data Available

Interacting Proteins for LINC01353 Gene

Gene Ontology (GO) - Biological Process for LINC01353 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01353 Gene

Drugs & Compounds for LINC01353 Gene

No Compound Related Data Available

Transcripts for LINC01353 Gene

mRNA/cDNA for LINC01353 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01353 Gene

No ASD Table

Relevant External Links for LINC01353 Gene

GeneLoc Exon Structure for
LINC01353
ECgene alternative splicing isoforms for
LINC01353

Expression for LINC01353 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01353 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01353 Gene:

LINC01353
genes like me logo Genes that share expression patterns with LINC01353: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01353 Gene

Orthologs for LINC01353 Gene

Evolution for LINC01353 Gene

ENSEMBL:
Gene Tree for LINC01353 (if available)
TreeFam:
Gene Tree for LINC01353 (if available)

No data available for Orthologs for LINC01353 Gene

Paralogs for LINC01353 Gene

No data available for Paralogs for LINC01353 Gene

Variants for LINC01353 Gene

Sequence variations from dbSNP and Humsavar for LINC01353 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000124737 -- 203,286,205(+) T/C upstream_transcript_variant
rs1001947987 -- 203,288,530(+) G/A non_coding_transcript_variant
rs1002613697 -- 203,285,567(+) C/T upstream_transcript_variant
rs1006276020 -- 203,289,090(+) C/T downstream_transcript_variant
rs1007684892 -- 203,288,918(+) C/T downstream_transcript_variant

Additional Variant Information for LINC01353 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01353

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01353 Gene

Disorders for LINC01353 Gene

Additional Disease Information for LINC01353

No disorders were found for LINC01353 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01353 Gene

Publications for LINC01353 Gene

No publications were found for LINC01353 Gene.

Products for LINC01353 Gene

Sources for LINC01353 Gene

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