LINC01352 Gene (RNA Gene)

Long Intergenic Non-Protein Coding RNA 1352

GC01P220829
GIFtS:
11
See more...

Aliases for LINC01352 Gene

Subcategory (RNA class) for LINC01352 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01352 Gene

  • Long Intergenic Non-Protein Coding RNA 1352 2 3 5
  • LINC01352 2 5 165
  • NONHSAG004358.2 91
  • HSALNG0010764 164

External Ids for LINC01352 Gene

Summaries for LINC01352 Gene

GeneCards Summary for LINC01352 Gene

LINC01352 (Long Intergenic Non-Protein Coding RNA 1352) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01352 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01352 Gene

Genomics for LINC01352 Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for LINC01352 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J220826 Enhancer 0.7 Ensembl 600.7 -1.7 -1654 2.8 CEBPG ZNF629 REST ZIC2 SP1 ZNF600 CEBPA FOXA2 ATF3 ZBTB48 ENSG00000272823 ENSG00000276642 LINC01352 lnc-MARC1-3 RNU6ATAC35P HLX-AS1 ENSG00000286231 HLX
GH01J220875 Promoter/Enhancer 2.3 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 8.7 +51.0 51031 9.7 CTCF PRDM10 ZNF692 FOXA1 LARP7 GABPA ZIC2 ZSCAN4 PATZ1 SP1 HLX HLX-AS1 lnc-HLX-2 lnc-RAB3GAP2-10 ENSG00000272823 LINC01352 RNU6ATAC35P ENSG00000286231 DUSP10
GH01J220843 Enhancer 0.5 Ensembl ENCODE 25.9 +14.2 14246 3.4 NR2F2 JUN LINC01352 HLX ENSG00000272823 RNU6ATAC35P piR-55036-008 HLX-AS1 ENSG00000286231
GH01J220928 Enhancer 1 FANTOM5 Ensembl 12.1 +99.1 99146 2 ZIC2 PKNOX1 MTA1 DPF2 HDAC1 SOX6 TCF12 EP300 ZNF766 ZXDB HLX LINC01352 lnc-HLX-2 LOC105372930 DUSP10
GH01J220833 Enhancer 0.3 Ensembl 26.3 +4.6 4646 1 ZNF10 ZNF143 LINC01352 piR-55036-008 ENSG00000286231 HLX HLX-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01352 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01352 Gene

Genomic Locations for LINC01352 Gene
chr1:220,829,255-220,832,430
(GRCh38/hg38)
Size:
3,176 bases
Orientation:
Plus strand
chr1:221,002,597-221,005,771
(GRCh37/hg19)
Size:
3,175 bases
Orientation:
Plus strand

Genomic View for LINC01352 Gene

Genes around LINC01352 on UCSC Golden Path with GeneCards custom track
LINC01352 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01352 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01352 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for LINC01352 Gene

Proteins for LINC01352 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for LINC01352 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01352 Gene

Domains & Families for LINC01352 Gene

Gene Families for LINC01352 Gene

HGNC:
genes like me logo Genes that share domains with LINC01352: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01352 Gene

Function for LINC01352 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for LINC01352 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01352 Gene

Localization for LINC01352 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01352 Gene

Pathways & Interactions for LINC01352 Gene

PathCards logo

SuperPathways for LINC01352 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01352 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01352 Gene

Drugs & Compounds for LINC01352 Gene

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  1. Drug
No Compound Related Data Available

Transcripts for LINC01352 Gene

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  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01352 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000014FB6A_9606 lncRNA 962 6

HGNC: 50578,

RefSeq: NR_110797,

Ensembl: ENST00000431347 (view in UCSC) ,

LncBook: HSALNT0022298,

LNCipedia: LINC01352:1,

NONCODE: NONHSAT009622.2,

URS00009B8EEB_9606 lncRNA 962 2

LncBook: HSALNT0022299,

NONCODE: NONHSAT150567.1,

URS0000D583CA_9606 lncRNA 961 2

LncBook: HSALNT0022301,

LNCipedia: LINC01352:3,

URS00008B4626_9606 lncRNA 959 2

LncBook: HSALNT0022300,

LNCipedia: LINC01352:2,

LINC01352 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01352 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01352 Gene

No ASD Table

Relevant External Links for LINC01352 Gene

GeneLoc Exon Structure for
LINC01352

Expression for LINC01352 Gene

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  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01352 Gene

mRNA expression in normal human tissues for LINC01352 Gene
mRNA expression by GTEx for LINC01352 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01352

genes like me logo Genes that share expression patterns with LINC01352: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01352 Gene

Orthologs for LINC01352 Gene

Evolution for LINC01352 Gene

ENSEMBL:
Gene Tree for LINC01352 (if available)
TreeFam:
Gene Tree for LINC01352 (if available)

No data available for Orthologs for LINC01352 Gene

Paralogs for LINC01352 Gene

No data available for Paralogs for LINC01352 Gene

Variants for LINC01352 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Additional dbSNP identifiers (rs#s) for LINC01352 Gene

Additional Variant Information for LINC01352 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01352

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01352 Gene

Disorders for LINC01352 Gene

Additional Disease Information for LINC01352

ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform

No disorders were found for LINC01352 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01352 Gene

Publications for LINC01352 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3

ExternalLinks

View latest publications for LINC01352 gene in Mastermind

Products for LINC01352 Gene

Sources for LINC01352 Gene