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Aliases for LINC01352 Gene

Subcategory (RNA class) for LINC01352 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01352 Gene

  • Long Intergenic Non-Protein Coding RNA 1352 2 3 5

External Ids for LINC01352 Gene

Summaries for LINC01352 Gene

GeneCards Summary for LINC01352 Gene

LINC01352 (Long Intergenic Non-Protein Coding RNA 1352) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01352 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01352 Gene

Genomics for LINC01352 Gene

GeneHancer (GH) Regulatory Elements for LINC01352 Gene

Promoters and enhancers for LINC01352 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J220875 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 8.6 +51.0 51031 9.7 FOXA2 YY1 GLIS2 ZNF213 ZNF143 RUNX3 SP3 RXRA JUNB REST HLX HLX-AS1 ENSG00000272823 LINC01352 RNU6ATAC35P GC01P220882 GC01M220652
GH01J220954 Enhancer 1.2 FANTOM5 Ensembl ENCODE 5.8 +127.5 127507 3.7 TEAD4 BACH1 CEBPG FOSL1 ZNF316 EGR1 FOSL2 FOS NFE2 TRIM24 HLX LINC01352 GC01P220953 LOC105372930 GC01M220652
GH01J220803 Enhancer 0.4 ENCODE 15.9 -25.0 -24984 0.5 CTCF TRIM22 LINC01352 ENSG00000272823 MARC1 RNU6ATAC35P GC01M220652
GH01J220874 Enhancer 1 Ensembl ENCODE dbSUPER 6.2 +45.3 45300 0.7 CTCF ZNF654 TRIM22 REST RAD21 NR2F2 YY1 SP1 ZNF143 SMC3 RNU6ATAC35P LINC01352 ENSG00000272823 HLX HLX-AS1 GC01M220652
GH01J220843 Enhancer 0.6 Ensembl ENCODE 5.6 +14.6 14621 1.7 JUN NR2F2 HLX RNU6ATAC35P LINC01352 HLX-AS1 GC01M220652
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01352 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01352 Gene

Genomic Locations for LINC01352 Gene
chr1:220,829,255-220,832,429
(GRCh38/hg38)
Size:
3,175 bases
Orientation:
Plus strand
chr1:221,002,597-221,005,771
(GRCh37/hg19)
Size:
3,175 bases
Orientation:
Plus strand

Genomic View for LINC01352 Gene

Genes around LINC01352 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01352 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01352 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01352 Gene

Proteins for LINC01352 Gene

Post-translational modifications for LINC01352 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01352 Gene

Domains & Families for LINC01352 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01352 Gene

Function for LINC01352 Gene

Phenotypes From GWAS Catalog for LINC01352 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01352 Gene

Localization for LINC01352 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01352 Gene

Pathways & Interactions for LINC01352 Gene

SuperPathways for LINC01352 Gene

No Data Available

Interacting Proteins for LINC01352 Gene

Gene Ontology (GO) - Biological Process for LINC01352 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01352 Gene

Drugs & Compounds for LINC01352 Gene

No Compound Related Data Available

Transcripts for LINC01352 Gene

mRNA/cDNA for LINC01352 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(1) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01352 Gene

No ASD Table

Relevant External Links for LINC01352 Gene

GeneLoc Exon Structure for
LINC01352
ECgene alternative splicing isoforms for
LINC01352

Expression for LINC01352 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01352 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01352 Gene:

LINC01352
genes like me logo Genes that share expression patterns with LINC01352: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01352 Gene

Orthologs for LINC01352 Gene

Evolution for LINC01352 Gene

ENSEMBL:
Gene Tree for LINC01352 (if available)
TreeFam:
Gene Tree for LINC01352 (if available)

No data available for Orthologs for LINC01352 Gene

Paralogs for LINC01352 Gene

No data available for Paralogs for LINC01352 Gene

Variants for LINC01352 Gene

Sequence variations from dbSNP and Humsavar for LINC01352 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1001415023 -- 220,828,972(+) G/A upstream_transcript_variant
rs1002226237 -- 220,832,616(+) T/C downstream_transcript_variant
rs1002365134 -- 220,830,233(+) T/C intron_variant
rs1003373186 -- 220,831,739(+) G/A intron_variant
rs1003455952 -- 220,827,363(+) G/C upstream_transcript_variant

Additional Variant Information for LINC01352 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01352

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01352 Gene

Disorders for LINC01352 Gene

Additional Disease Information for LINC01352

No disorders were found for LINC01352 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01352 Gene

Publications for LINC01352 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for LINC01352 Gene

Sources for LINC01352 Gene

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