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Aliases for LINC01350 Gene

Subcategory (RNA class) for LINC01350 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01350 Gene

  • Long Intergenic Non-Protein Coding RNA 1350 2 3 5
  • GS1-204I12.1 3

External Ids for LINC01350 Gene

Summaries for LINC01350 Gene

GeneCards Summary for LINC01350 Gene

LINC01350 (Long Intergenic Non-Protein Coding RNA 1350) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01350 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01350 Gene

Genomics for LINC01350 Gene

GeneHancer (GH) Regulatory Elements for LINC01350 Gene

Promoters and enhancers for LINC01350 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J185154 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.5 +471.9 471912 3.8 HDGF PKNOX1 CLOCK ARNT ARID4B SIN3A FEZF1 ZNF2 ZBTB7B YY1 TRMT1L SWT1 FTH1P25 ENSG00000252612 LINC01350 RNF2
GH01J185564 Enhancer 1.3 FANTOM5 Ensembl ENCODE 16.2 +60.1 60120 8.2 MXI1 JUN MAX BMI1 RFX5 YY1 FOSL1 HNF4G RCOR1 NFE2 LINC01350 IVNS1ABP SWT1 GC01M185557 GC01P185628
GH01J185559 Enhancer 1.2 FANTOM5 Ensembl ENCODE 17.2 +68.1 68072 1.5 CTCF PKNOX1 ESRRA MAX CEBPG BATF IRF4 RAD21 CTBP1 ZNF143 GC01M185557 LINC01350 IVNS1ABP PRG4 GC01P185628
GH01J185592 Enhancer 0.9 Ensembl ENCODE 11.6 +34.0 34031 3.6 CTCF RXRA TEAD1 ZSCAN4 TRIM22 REST ELF1 RAD21 RFX5 YY1 LINC01350 IVNS1ABP GC01P185628 GC01M185557
GH01J185573 Enhancer 0.4 ENCODE 15.3 +54.1 54081 2.1 IKZF1 MAFG NFE2 LINC01350 GC01M185557 GC01P185628
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01350 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01350 Gene

Genomic Locations for LINC01350 Gene
chr1:185,558,372-185,628,527
(GRCh38/hg38)
Size:
70,156 bases
Orientation:
Minus strand
chr1:185,527,504-185,597,659
(GRCh37/hg19)
Size:
70,156 bases
Orientation:
Minus strand

Genomic View for LINC01350 Gene

Genes around LINC01350 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01350 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01350 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01350 Gene

Proteins for LINC01350 Gene

Post-translational modifications for LINC01350 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01350 Gene

Domains & Families for LINC01350 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01350 Gene

Function for LINC01350 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01350 Gene

Localization for LINC01350 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01350 Gene

Pathways & Interactions for LINC01350 Gene

SuperPathways for LINC01350 Gene

No Data Available

Interacting Proteins for LINC01350 Gene

Gene Ontology (GO) - Biological Process for LINC01350 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01350 Gene

Drugs & Compounds for LINC01350 Gene

No Compound Related Data Available

Transcripts for LINC01350 Gene

mRNA/cDNA for LINC01350 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(5) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01350 Gene

No ASD Table

Relevant External Links for LINC01350 Gene

GeneLoc Exon Structure for
LINC01350
ECgene alternative splicing isoforms for
LINC01350

Expression for LINC01350 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01350 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01350 Gene:

LINC01350
genes like me logo Genes that share expression patterns with LINC01350: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01350 Gene

Orthologs for LINC01350 Gene

Evolution for LINC01350 Gene

ENSEMBL:
Gene Tree for LINC01350 (if available)
TreeFam:
Gene Tree for LINC01350 (if available)

No data available for Orthologs for LINC01350 Gene

Paralogs for LINC01350 Gene

No data available for Paralogs for LINC01350 Gene

Variants for LINC01350 Gene

Sequence variations from dbSNP and Humsavar for LINC01350 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000071091 -- 185,614,853(-) C/T intron_variant
rs1000117116 -- 185,577,073(-) A/T intron_variant
rs1000143869 -- 185,590,082(-) A/C intron_variant
rs1000203990 -- 185,599,168(-) A/G intron_variant
rs1000211133 -- 185,603,210(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01350 Gene

Variant ID Type Subtype PubMed ID
dgv234n106 CNV tandem duplication 24896259
esv3306426 CNV mobile element insertion 20981092
esv3425927 CNV insertion 20981092
nsv1127045 CNV deletion 24896259
nsv1141903 OTHER inversion 24896259
nsv548398 CNV gain 21841781

Additional Variant Information for LINC01350 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01350

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01350 Gene

Disorders for LINC01350 Gene

Additional Disease Information for LINC01350

No disorders were found for LINC01350 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01350 Gene

Publications for LINC01350 Gene

  1. Identification of 9 novel transcripts and two RGSL genes within the hereditary prostate cancer region (HPC1) at 1q25. (PMID: 12801632) Silva AP … Camargo AA (Gene 2003) 3 58

Products for LINC01350 Gene

Sources for LINC01350 Gene

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