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Aliases for LINC01349 Gene

Subcategory (RNA class) for LINC01349 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01349 Gene

  • Long Intergenic Non-Protein Coding RNA 1349 2 3 5

External Ids for LINC01349 Gene

Summaries for LINC01349 Gene

GeneCards Summary for LINC01349 Gene

LINC01349 (Long Intergenic Non-Protein Coding RNA 1349) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01349 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01349 Gene

Genomics for LINC01349 Gene

GeneHancer (GH) Regulatory Elements for LINC01349 Gene

Promoters and enhancers for LINC01349 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I100621 Enhancer 1.1 Ensembl ENCODE dbSUPER 5.8 +23.5 23451 4.4 JUN CEBPG FEZF1 ZIC2 ZFHX2 GLIS2 POLR2A PATZ1 PRDM10 ATF7 VCAM1 GPR88 LINC01349 RTCA RPL7AP17
GH01I100626 Enhancer 1 Ensembl ENCODE dbSUPER 5.9 +17.9 17881 5.8 HDAC1 JUNB CEBPG BATF ATF2 ZFHX2 JUND POLR2A IKZF1 FOS VCAM1 LINC01349 RPL7AP17
GH01I100657 Enhancer 0.6 ENCODE dbSUPER 5.9 -11.6 -11551 1.5 CEBPA HNF4A VCAM1 LINC01349 GC01P100654 GC01P100677
GH01I100643 Enhancer 0.7 ENCODE dbSUPER 0.8 +3.0 3045 0.1 TAF1 EBF1 HNF4A RAD21 YY1 GABPA GPR88 LINC01349 RPL7AP17
GH01I100596 Enhancer 1 Ensembl ENCODE dbSUPER 0.2 +49.8 49753 2.1 MEIS2 PKNOX1 JUN CEBPG FOSL1 JUND POLR2A IKZF1 FOS PRDM1 GPR88 RPL7AP17 LINC01349
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01349 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01349 Gene

Genomic Locations for LINC01349 Gene
chr1:100,627,049-100,647,004
(GRCh38/hg38)
Size:
19,956 bases
Orientation:
Minus strand
chr1:101,092,605-101,112,560
(GRCh37/hg19)

Genomic View for LINC01349 Gene

Genes around LINC01349 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01349 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01349 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01349 Gene

Proteins for LINC01349 Gene

Post-translational modifications for LINC01349 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01349 Gene

Domains & Families for LINC01349 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01349 Gene

Function for LINC01349 Gene

Phenotypes From GWAS Catalog for LINC01349 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01349 Gene

Localization for LINC01349 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01349 Gene

Pathways & Interactions for LINC01349 Gene

SuperPathways for LINC01349 Gene

No Data Available

Interacting Proteins for LINC01349 Gene

Gene Ontology (GO) - Biological Process for LINC01349 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01349 Gene

Drugs & Compounds for LINC01349 Gene

No Compound Related Data Available

Transcripts for LINC01349 Gene

mRNA/cDNA for LINC01349 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01349 Gene

No ASD Table

Relevant External Links for LINC01349 Gene

GeneLoc Exon Structure for
LINC01349
ECgene alternative splicing isoforms for
LINC01349

Expression for LINC01349 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01349 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01349 Gene:

LINC01349
genes like me logo Genes that share expression patterns with LINC01349: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01349 Gene

Orthologs for LINC01349 Gene

Evolution for LINC01349 Gene

ENSEMBL:
Gene Tree for LINC01349 (if available)
TreeFam:
Gene Tree for LINC01349 (if available)

No data available for Orthologs for LINC01349 Gene

Paralogs for LINC01349 Gene

No data available for Paralogs for LINC01349 Gene

Variants for LINC01349 Gene

Sequence variations from dbSNP and Humsavar for LINC01349 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000003191 -- 100,643,703(-) G/T intron_variant
rs1000075154 -- 100,634,954(-) T/G intron_variant
rs1000165748 -- 100,636,661(-) C/T intron_variant
rs1000440468 -- 100,636,903(-) T/G intron_variant
rs1000481813 -- 100,632,575(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01349 Gene

Variant ID Type Subtype PubMed ID
esv3586948 CNV gain 21293372
nsv546889 CNV gain 21841781
nsv830837 CNV loss 17160897
nsv946097 CNV duplication 23825009

Additional Variant Information for LINC01349 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01349

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01349 Gene

Disorders for LINC01349 Gene

Additional Disease Information for LINC01349

No disorders were found for LINC01349 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01349 Gene

Publications for LINC01349 Gene

No publications were found for LINC01349 Gene.

Products for LINC01349 Gene

Sources for LINC01349 Gene

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