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Aliases for LINC01348 Gene

Subcategory (RNA class) for LINC01348 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01348 Gene

  • Long Intergenic Non-Protein Coding RNA 1348 2 3 5

External Ids for LINC01348 Gene

Summaries for LINC01348 Gene

GeneCards Summary for LINC01348 Gene

LINC01348 (Long Intergenic Non-Protein Coding RNA 1348) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01348 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01348 Gene

Genomics for LINC01348 Gene

GeneHancer (GH) Regulatory Elements for LINC01348 Gene

Promoters and enhancers for LINC01348 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J235072 Enhancer 1.8 FANTOM5 Ensembl ENCODE dbSUPER 0.7 -4.6 -4620 13.3 HDGF PKNOX1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 YY1 ARID4B TOMM20 GGPS1 IRF2BP2 LINC01348 ENSG00000233018
GH01J235090 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -16.6 -16555 1.5 PKNOX1 ATF1 SIN3A ZNF766 ATF7 ZNF263 NCOA1 ZHX2 REST GMEB1 ARID4B RPS21P1 IRF2BP2 LDHAP2 TOMM20 ENSG00000228830 SNORA14B LYST TARBP1 ENSG00000212144
GH01J235050 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +23.0 22968 0.9 HDGF HDAC1 PKNOX1 ATF1 KLF17 ZNF335 EGR1 ATF7 RUNX3 CREM ARID4B RPS21P1 IRF2BP2 GC01M235000 LINC01348
GH01J235046 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.3 +25.7 25711 3.5 ATF1 FOXA2 RB1 STAT5A BMI1 BATF KLF5 IRF4 RAD21 YY1 ARID4B RPS21P1 IRF2BP2 GC01M235000 LINC01348
GH01J235092 Enhancer 1.1 Ensembl ENCODE 0.4 -19.4 -19384 1.4 HDGF ZFP64 SIN3A ARID2 ZNF143 ATF7 RUNX3 KLF13 REST SMARCA4 ENSG00000228830 IRF2BP2 SNORA14B TOMM20 TARBP1 ENSG00000212144 ENSG00000233018 LINC01348
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01348 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01348 Gene

Genomic Locations for LINC01348 Gene
chr1:235,065,474-235,074,220
(GRCh38/hg38)
Size:
8,747 bases
Orientation:
Minus strand

Genomic View for LINC01348 Gene

Genes around LINC01348 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01348 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01348 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01348 Gene

Proteins for LINC01348 Gene

Post-translational modifications for LINC01348 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01348 Gene

Domains & Families for LINC01348 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01348 Gene

Function for LINC01348 Gene

Phenotypes From GWAS Catalog for LINC01348 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01348 Gene

Localization for LINC01348 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01348 Gene

Pathways & Interactions for LINC01348 Gene

SuperPathways for LINC01348 Gene

No Data Available

Interacting Proteins for LINC01348 Gene

Gene Ontology (GO) - Biological Process for LINC01348 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01348 Gene

Drugs & Compounds for LINC01348 Gene

No Compound Related Data Available

Transcripts for LINC01348 Gene

mRNA/cDNA for LINC01348 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(2) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01348 Gene

No ASD Table

Relevant External Links for LINC01348 Gene

GeneLoc Exon Structure for
LINC01348
ECgene alternative splicing isoforms for
LINC01348

Expression for LINC01348 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01348 Gene:

LINC01348
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01348 Gene

Orthologs for LINC01348 Gene

Evolution for LINC01348 Gene

ENSEMBL:
Gene Tree for LINC01348 (if available)
TreeFam:
Gene Tree for LINC01348 (if available)

No data available for Orthologs for LINC01348 Gene

Paralogs for LINC01348 Gene

No data available for Paralogs for LINC01348 Gene

Variants for LINC01348 Gene

Sequence variations from dbSNP and Humsavar for LINC01348 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000013839 -- 235,066,233(-) G/C intron_variant
rs1000072170 -- 235,071,657(-) G/A upstream_transcript_variant
rs1000128078 -- 235,065,871(-) A/C intron_variant
rs1000630083 -- 235,070,059(-) C/G upstream_transcript_variant
rs1001482563 -- 235,070,256(-) A/T upstream_transcript_variant

Additional Variant Information for LINC01348 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01348

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for LINC01348 Gene

Disorders for LINC01348 Gene

Additional Disease Information for LINC01348

No disorders were found for LINC01348 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01348 Gene

Publications for LINC01348 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for LINC01348 Gene

Sources for LINC01348 Gene

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