Aliases for LINC01347 Gene

Subcategory (RNA class) for LINC01347 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for LINC01347 Gene

  • Long Intergenic Non-Protein Coding RNA 1347 2 3 5
  • NONHSAG004828 92
  • Lnc-CEP170-13 168
  • HSALNG0012016 167
  • HSALNG0012015 167
  • LINC01347 2

External Ids for LINC01347 Gene

Previous GeneCards Identifiers for LINC01347 Gene

  • GC01M243056
  • GC01M243058

Summaries for LINC01347 Gene

GeneCards Summary for LINC01347 Gene

LINC01347 (Long Intergenic Non-Protein Coding RNA 1347) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01347 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01347 Gene

Genomics for LINC01347 Gene

GeneHancer (GH) Regulatory Elements for LINC01347 Gene

Promoters and enhancers for LINC01347 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J243101 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas 500.7 +0.3 320 1.6 ZBTB40 NRF1 SP1 PHF8 SIX5 AFF1 TARDBP REST TOE1 RUNX1 LINC01347 piR-60253-003 SDCCAG8 CEP170 RF00017-543
GH01J243103 Enhancer 0.8 Ensembl 0.7 -3.2 -3157 3.4 PHB2 HES1 CTBP1 HDAC3 LEF1 NCOR1 TRIM25 ZNF282 NFIC ZBTB17 LINC01347 ENSG00000227230
GH01J243113 Enhancer 0.7 ENCODE 0.4 -12.7 -12700 1.1 ZNF10 ZIC2 ZNF423 ZNF341 OSR2 WT1 ZBTB17 ZNF207 MEF2B NBN SDCCAG8 CEP170 LINC01347 ENSG00000227230
GH01J243081 Enhancer 0.2 Ensembl 0.4 +20.5 20543 0.4 RNU6-747P RF00026-113 piR-46119-006 LINC01347
GH01J243121 Enhancer 0.2 Ensembl 0.4 -21.2 -21157 2.2 ENSG00000227230 LINC01347
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01347 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01347 Gene

Genomic Locations for LINC01347 Gene
chr1:243,053,569-243,101,744
(GRCh38/hg38)
Size:
48,176 bases
Orientation:
Minus strand

Genomic View for LINC01347 Gene

Genes around LINC01347 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01347 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01347 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01347 Gene

Proteins for LINC01347 Gene

Post-translational modifications for LINC01347 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01347 Gene

Domains & Families for LINC01347 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01347 Gene

Function for LINC01347 Gene

Phenotypes From GWAS Catalog for LINC01347 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01347 Gene

Localization for LINC01347 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01347 Gene

Pathways & Interactions for LINC01347 Gene

PathCards logo

SuperPathways for LINC01347 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for LINC01347 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01347 Gene

Drugs & Compounds for LINC01347 Gene

No Compound Related Data Available

Transcripts for LINC01347 Gene

mRNA/cDNA for LINC01347 Gene

19 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
15 NONCODE transcripts :
13 LncBook transcripts :
17 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01347 Gene

No ASD Table

Relevant External Links for LINC01347 Gene

GeneLoc Exon Structure for
LINC01347

Expression for LINC01347 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01347 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for LINC01347

genes like me logo Genes that share expression patterns with LINC01347: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01347 Gene

Orthologs for LINC01347 Gene

Evolution for LINC01347 Gene

ENSEMBL:
Gene Tree for LINC01347 (if available)
TreeFam:
Gene Tree for LINC01347 (if available)

No data available for Orthologs for LINC01347 Gene

Paralogs for LINC01347 Gene

No data available for Paralogs for LINC01347 Gene

Variants for LINC01347 Gene

Additional dbSNP identifiers (rs#s) for LINC01347 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01347 Gene

Variant ID Type Subtype PubMed ID
esv23865 CNV gain+loss 19812545
esv2726451 CNV deletion 23290073
esv2726462 CNV deletion 23290073
esv2759010 CNV gain+loss 17122850
esv2763747 CNV gain+loss 21179565
esv32774 CNV gain 17666407
esv3891281 CNV gain 25118596
nsv1012884 CNV loss 25217958
nsv1013001 CNV gain 25217958
nsv433351 CNV gain 18776910
nsv470790 CNV gain 18288195
nsv519429 CNV gain 19592680
nsv945422 CNV duplication 23825009

Additional Variant Information for LINC01347 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01347

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01347 Gene

Disorders for LINC01347 Gene

Additional Disease Information for LINC01347

No disorders were found for LINC01347 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01347 Gene

Publications for LINC01347 Gene

  1. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3 54

Products for LINC01347 Gene

Sources for LINC01347 Gene