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Aliases for LINC01347 Gene

Subcategory (RNA class) for LINC01347 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for LINC01347 Gene

  • Long Intergenic Non-Protein Coding RNA 1347 2 3 5

External Ids for LINC01347 Gene

Summaries for LINC01347 Gene

GeneCards Summary for LINC01347 Gene

LINC01347 (Long Intergenic Non-Protein Coding RNA 1347) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01347 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01347 Gene

Genomics for LINC01347 Gene

GeneHancer (GH) Regulatory Elements for LINC01347 Gene

Promoters and enhancers for LINC01347 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I243101 Promoter/Enhancer 1.4 Ensembl ENCODE 550.8 +0.1 120 1.2 HDGF ATF1 ARNT SIN3A NCOA2 POLR2B CBX5 E2F8 ZNF143 ATF7 LINC01347 SDCCAG8 CEP170 RNU6-747P
GH01I244046 Promoter/Enhancer 3 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 -948.0 -947951 7.4 HDGF PKNOX1 ARNT SIN3A FEZF1 DMAP1 ZNF2 YY1 POLR2B ZNF213 ZBTB18 DESI2 ENSG00000253326 COX20 AKT3 HNRNPU LINC01347 LOC101928068 ENSG00000236031 ADSS
GH01I243113 Enhancer 1 Ensembl ENCODE 0.4 -12.7 -12696 1.1 ZBTB6 ZBTB21 FEZF1 ZIC2 ZNF121 ZNF366 PATZ1 ZNF207 ZNF600 IKZF2 SDCCAG8 CEP170 LINC01347 ENSG00000227230
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around LINC01347 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01347 Gene

Genomic Locations for LINC01347 Gene
chr1:243,056,307-243,101,744
(GRCh38/hg38)
Size:
45,438 bases
Orientation:
Minus strand

Genomic View for LINC01347 Gene

Genes around LINC01347 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01347 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01347 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01347 Gene

Proteins for LINC01347 Gene

Post-translational modifications for LINC01347 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01347 Gene

Domains & Families for LINC01347 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01347 Gene

Function for LINC01347 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01347 Gene

Localization for LINC01347 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01347 Gene

Pathways & Interactions for LINC01347 Gene

SuperPathways for LINC01347 Gene

No Data Available

Interacting Proteins for LINC01347 Gene

Gene Ontology (GO) - Biological Process for LINC01347 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01347 Gene

Drugs & Compounds for LINC01347 Gene

No Compound Related Data Available

Transcripts for LINC01347 Gene

mRNA/cDNA for LINC01347 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01347 Gene

No ASD Table

Relevant External Links for LINC01347 Gene

GeneLoc Exon Structure for
LINC01347
ECgene alternative splicing isoforms for
LINC01347

Expression for LINC01347 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01347 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01347 Gene:

LINC01347
genes like me logo Genes that share expression patterns with LINC01347: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01347 Gene

Orthologs for LINC01347 Gene

Evolution for LINC01347 Gene

ENSEMBL:
Gene Tree for LINC01347 (if available)
TreeFam:
Gene Tree for LINC01347 (if available)

No data available for Orthologs for LINC01347 Gene

Paralogs for LINC01347 Gene

No data available for Paralogs for LINC01347 Gene

Variants for LINC01347 Gene

Sequence variations from dbSNP and Humsavar for LINC01347 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000033586 -- 243,075,991(-) T/A intron_variant
rs1000262058 -- 243,101,301(-) G/C intron_variant
rs1000293896 -- 243,056,125(-) G/C downstream_transcript_variant
rs1000543008 -- 243,082,918(-) T/TT intron_variant
rs1000600680 -- 243,100,351(-) G/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01347 Gene

Variant ID Type Subtype PubMed ID
esv23865 CNV gain+loss 19812545
esv2726451 CNV deletion 23290073
esv2726462 CNV deletion 23290073
esv2759010 CNV gain+loss 17122850
esv2763747 CNV gain+loss 21179565
esv32774 CNV gain 17666407
esv3891281 CNV gain 25118596
nsv1012884 CNV loss 25217958
nsv1013001 CNV gain 25217958
nsv433351 CNV gain 18776910
nsv470790 CNV gain 18288195
nsv519429 CNV gain 19592680
nsv945422 CNV duplication 23825009

Additional Variant Information for LINC01347 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01347

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01347 Gene

Disorders for LINC01347 Gene

Additional Disease Information for LINC01347

No disorders were found for LINC01347 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01347 Gene

Publications for LINC01347 Gene

No publications were found for LINC01347 Gene.

Products for LINC01347 Gene

Sources for LINC01347 Gene

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