Free for academic non-profit institutions. Other users need a Commercial license

Aliases for LINC01346 Gene

Subcategory (RNA class) for LINC01346 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for LINC01346 Gene

  • Long Intergenic Non-Protein Coding RNA 1346 2 3 5

External Ids for LINC01346 Gene

Summaries for LINC01346 Gene

GeneCards Summary for LINC01346 Gene

LINC01346 (Long Intergenic Non-Protein Coding RNA 1346) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for LINC01346 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for LINC01346 Gene

Genomics for LINC01346 Gene

GeneHancer (GH) Regulatory Elements for LINC01346 Gene

Promoters and enhancers for LINC01346 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J003902 Enhancer 1.1 Ensembl ENCODE dbSUPER 0.3 -37.5 -37470 2.2 NFIA RXRA NFRKB CEBPB REST ZIC2 RAD21 FOXA1 GABPA YY1 C1orf174 LINC01134 PIR46444 LINC01346
GH01J003910 Enhancer 0.9 Ensembl ENCODE 0.3 -29.5 -29482 1.5 CTCF MXI1 RB1 ARID4B KLF17 MAX ERF ZIC2 ZNF2 RBPJ DFFB C1orf174 PIR46444 LINC01134 LINC01346
GH01J003944 Enhancer 0.2 FANTOM5 0.7 +4.5 4480 0.2 TP73 CEP104 DFFB LINC01345 WRAP73 LINC01346
GH01J003928 Enhancer 0.2 FANTOM5 0.4 -12.3 -12321 0.4 TP73 WRAP73 DFFB CEP104 LINC01346 PIR46444
GH01J003905 Enhancer 0.2 dbSUPER 0.3 -35.0 -34971 0.8 C1orf174 PIR46444 LINC01134 LINC01346
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01346 on UCSC Golden Path with GeneCards custom track

Genomic Locations for LINC01346 Gene

Genomic Locations for LINC01346 Gene
chr1:3,940,565-3,955,262
(GRCh38/hg38)
Size:
14,698 bases
Orientation:
Plus strand
chr1:4,000,672-4,015,322
(GRCh37/hg19)
Size:
14,651 bases
Orientation:
Plus strand

Genomic View for LINC01346 Gene

Genes around LINC01346 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
LINC01346 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01346 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01346 Gene

Proteins for LINC01346 Gene

Post-translational modifications for LINC01346 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01346 Gene

Domains & Families for LINC01346 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for LINC01346 Gene

Function for LINC01346 Gene

Phenotypes for LINC01346 Gene

genes like me logo Genes that share phenotypes with LINC01346: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01346 Gene

Localization for LINC01346 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01346 Gene

Pathways & Interactions for LINC01346 Gene

SuperPathways for LINC01346 Gene

No Data Available

Interacting Proteins for LINC01346 Gene

Gene Ontology (GO) - Biological Process for LINC01346 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for LINC01346 Gene

Drugs & Compounds for LINC01346 Gene

No Compound Related Data Available

Transcripts for LINC01346 Gene

mRNA/cDNA for LINC01346 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(4) RNA Central transcripts :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01346 Gene

No ASD Table

Relevant External Links for LINC01346 Gene

GeneLoc Exon Structure for
LINC01346
ECgene alternative splicing isoforms for
LINC01346

Expression for LINC01346 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for LINC01346 Gene

NURSA nuclear receptor signaling pathways regulating expression of LINC01346 Gene:

LINC01346
genes like me logo Genes that share expression patterns with LINC01346: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01346 Gene

Orthologs for LINC01346 Gene

Evolution for LINC01346 Gene

ENSEMBL:
Gene Tree for LINC01346 (if available)
TreeFam:
Gene Tree for LINC01346 (if available)

No data available for Orthologs for LINC01346 Gene

Paralogs for LINC01346 Gene

No data available for Paralogs for LINC01346 Gene

Variants for LINC01346 Gene

Sequence variations from dbSNP and Humsavar for LINC01346 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000183009 -- 3,949,719(+) C/T intron_variant
rs1000219714 -- 3,946,411(+) C/A intron_variant
rs1000353310 -- 3,946,667(+) G/C intron_variant
rs1000567469 -- 3,950,808(+) G/A intron_variant
rs1000620347 -- 3,939,385(+) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for LINC01346 Gene

Variant ID Type Subtype PubMed ID
dgv3e214 CNV gain 21293372
esv3585042 CNV gain 21293372
esv3585054 CNV gain 21293372
nsv1012423 CNV gain 25217958
nsv545130 CNV gain 21841781

Additional Variant Information for LINC01346 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01346

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for LINC01346 Gene

Disorders for LINC01346 Gene

Additional Disease Information for LINC01346

No disorders were found for LINC01346 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01346 Gene

Publications for LINC01346 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for LINC01346 Gene

Sources for LINC01346 Gene

Content
Loading form....