Aliases for LINC01344 Gene

Subcategory (RNA class) for LINC01344 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for LINC01344 Gene

  • Long Intergenic Non-Protein Coding RNA 1344 2 3 5
  • LINC01344 2 5 165
  • NONHSAG003658.2 91
  • HSALNG0008895 164
  • GS1-122H1.2 3

External Ids for LINC01344 Gene

Previous GeneCards Identifiers for LINC01344 Gene

  • GC01M182129

Summaries for LINC01344 Gene

GeneCards Summary for LINC01344 Gene

LINC01344 (Long Intergenic Non-Protein Coding RNA 1344) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for LINC01344 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for LINC01344 Gene

Genomics for LINC01344 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for LINC01344 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J182243 Promoter/Enhancer 1.1 EPDnew ENCODE 600.2 +69.4 69445 1.8 FOXA1 TCF12 NRF1 CTBP1 ESRRA PKNOX1 ZNF217 TRIM24 NCOR1 GATAD2B LINC01344 RNU6-152P RPL18P2 GLUL ENSG00000224810 piR-57965-002 lnc-RGSL1-6 ZNF648
GH01J182313 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 -2.5 -2536 5.2 GATAD2A ZNF512 LEF1 IKZF1 JUND FOXA1 MTA2 PHF21A PKNOX1 ZNF24 EIF1P3 LINC01344 RF00026-089 RNU6-152P GLUL ZNF648
GH01J182309 Enhancer 1.2 Ensembl ENCODE dbSUPER 0.7 +4.1 4069 0.8 GATAD2A SOX13 IKZF1 RCOR2 RXRB IRF2 SP1 CEBPA MGA TCF7 GLUL TEDDM1 LINC01344 piR-31937-011 ZNF648
GH01J182299 Enhancer 1.4 FANTOM5 ENCODE dbSUPER 0.4 +13.1 13069 3.7 ARHGAP35 GATAD2A ATF7 ZNF512 RFX1 LEF1 SOX13 IKZF1 NFKBIZ ZNF692 DHX9 HMGN1P4 LAMC1 GLUL RNU6-152P RPL18P2 EIF1P3 LINC01344 piR-31937-011 ZNF648
GH01J182288 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +23.1 23127 5.3 HNRNPL GATAD2A REST TFE3 SOX13 IKZF1 RCOR2 ZNF7 JUND MTA2 DHX9 HMGN1P4 LAMC1 RNU6-152P RPL18P2 GLUL piR-31937-011 LINC01344 ZNF648
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around LINC01344 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for LINC01344 Gene

Genomic Locations for LINC01344 Gene
chr1:182,096,338-182,314,061
(GRCh38/hg38)
Size:
217,724 bases
Orientation:
Minus strand
chr1:182,098,445-182,283,196
(GRCh37/hg19)
Size:
184,752 bases
Orientation:
Minus strand

Genomic View for LINC01344 Gene

Genes around LINC01344 on UCSC Golden Path with GeneCards custom track
LINC01344 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
LINC01344 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for LINC01344 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for LINC01344 Gene

Proteins for LINC01344 Gene

Post-translational modifications for LINC01344 Gene

No Post-translational modifications

No data available for DME Specific Peptides for LINC01344 Gene

Domains & Families for LINC01344 Gene

Gene Families for LINC01344 Gene

genes like me logo Genes that share domains with LINC01344: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for LINC01344 Gene

Function for LINC01344 Gene

Phenotypes From GWAS Catalog for LINC01344 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for LINC01344 Gene

Localization for LINC01344 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for LINC01344 Gene

Pathways & Interactions for LINC01344 Gene

PathCards logo

SuperPathways for LINC01344 Gene

No Data Available

Gene Ontology (GO) - Biological Process for LINC01344 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for LINC01344 Gene

Drugs & Compounds for LINC01344 Gene

No Compound Related Data Available

Transcripts for LINC01344 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for LINC01344 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00002CF3EB_9606 lncRNA 261 4

Ensembl: ENST00000420760 (view in UCSC) ,

LncBook: HSALNT0018420,

LNCipedia: LINC01344:4,

NONCODE: NONHSAT008309.2,

URS000055F6C0_9606 lncRNA 2631 3

Ensembl: ENST00000608183 (view in UCSC) ,

LNCipedia: LINC01344:3,

NONCODE: NONHSAT008306.2,

URS000075D72E_9606 lncRNA 571 2

HGNC: 50554,

RefSeq: NR_104175,

URS0000EEADAD_9606 lncRNA 2299 1

Ensembl: ENST00000653755 (view in UCSC) ,

URS0000EEDA76_9606 lncRNA 1196 1

Ensembl: ENST00000449842 (view in UCSC) ,

LINC01344 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for LINC01344 Gene

2 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for LINC01344 Gene

No ASD Table

Relevant External Links for LINC01344 Gene

GeneLoc Exon Structure for
LINC01344

Expression for LINC01344 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for LINC01344 Gene

genes like me logo Genes that share expression patterns with LINC01344: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for LINC01344 Gene

Orthologs for LINC01344 Gene

Evolution for LINC01344 Gene

ENSEMBL:
Gene Tree for LINC01344 (if available)
TreeFam:
Gene Tree for LINC01344 (if available)

No data available for Orthologs for LINC01344 Gene

Paralogs for LINC01344 Gene

No data available for Paralogs for LINC01344 Gene

Variants for LINC01344 Gene

Additional dbSNP identifiers (rs#s) for LINC01344 Gene

Structural Variations from Database of Genomic Variants (DGV) for LINC01344 Gene

Variant ID Type Subtype PubMed ID
esv1007138 CNV insertion 20482838
esv25907 CNV loss 19812545
esv2658469 CNV deletion 23128226
esv27430 CNV gain 19812545
esv3348817 CNV insertion 20981092
esv3588097 CNV loss 21293372
esv3588098 CNV loss 21293372
esv3588099 CNV loss 21293372
nsv1145384 CNV deletion 24896259
nsv523295 CNV loss 19592680
nsv548358 CNV gain 21841781

Additional Variant Information for LINC01344 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
LINC01344

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for LINC01344 Gene

Disorders for LINC01344 Gene

No disorders were found for LINC01344 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for LINC01344 Gene

Publications for LINC01344 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for LINC01344 Gene

Sources for LINC01344 Gene